View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_low_10 (Length: 480)

Name: NF18796_low_10
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_low_10
NF18796_low_10
[»] chr4 (4 HSPs)
chr4 (16-468)||(54396452-54396904)
chr4 (121-468)||(23587525-23587872)
chr4 (121-468)||(23596377-23596724)
chr4 (121-195)||(35132750-35132824)
[»] chr7 (21 HSPs)
chr7 (121-468)||(8102696-8103043)
chr7 (16-468)||(8017100-8017552)
chr7 (16-435)||(39985708-39986127)
chr7 (121-191)||(7877525-7877595)
chr7 (373-443)||(8581754-8581824)
chr7 (124-254)||(17260484-17260614)
chr7 (115-195)||(10494160-10494240)
chr7 (121-191)||(8602280-8602350)
chr7 (130-191)||(8382677-8382738)
chr7 (121-190)||(8590945-8591014)
chr7 (115-195)||(13333242-13333322)
chr7 (124-167)||(6789842-6789885)
chr7 (118-257)||(8659603-8659742)
chr7 (121-195)||(3147574-3147648)
chr7 (121-191)||(8636135-8636205)
chr7 (115-164)||(1301797-1301846)
chr7 (369-458)||(7877773-7877862)
chr7 (373-434)||(8570374-8570435)
chr7 (124-164)||(8585501-8585541)
chr7 (370-434)||(8609980-8610044)
chr7 (356-420)||(8628609-8628673)
[»] chr2 (9 HSPs)
chr2 (114-190)||(12234996-12235072)
chr2 (121-257)||(17716485-17716621)
chr2 (88-332)||(5445510-5445754)
chr2 (121-188)||(12245198-12245265)
chr2 (118-167)||(7542556-7542605)
chr2 (388-435)||(17648100-17648147)
chr2 (388-435)||(17666742-17666789)
chr2 (121-191)||(16657309-16657379)
chr2 (388-436)||(17705797-17705845)
[»] chr1 (1 HSPs)
chr1 (118-191)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Complemental strand, 54396904 - 54396452
Alignment:
Q  16 gttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396904 gttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcatc 54396805  T
Q  116 cagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54396804 cagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgag 54396705  T
Q  216 gattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396704 gattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggt 54396605  T
Q  316 ggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataaca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396604 ggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataaca 54396505  T
Q  416 gaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396504 gaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 54396452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 468
Target Start/End: Original strand, 23587525 - 23587872
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaagatta 220  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||  ||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  221 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 320  Q
    ||||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaac 23587724  T
Q  321 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 420  Q
    ||| |||||||| || ||||||||||| ||||| ||||| || || |||||||| ||||||||||| ||| | || |||||||||||||||||||| |||    
T  23587725 ttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatg 23587824  T
Q  421 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 468  Q
    ||||| |||||||||   || || | |||||| |||||||||||||||    
T  23587825 gtgaaccattttgttcaagaattcaagaggaagaataagaaggatatt 23587872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 121 - 468
Target Start/End: Original strand, 23596377 - 23596724
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaagatta 220  Q
    |||||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||  ||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  221 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 320  Q
    |||| ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaac 23596576  T
Q  321 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 420  Q
    ||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||| | || |||||||||||||||||||| |||    
T  23596577 ttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatg 23596676  T
Q  421 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 468  Q
    ||||| |||||||||   || || | |||||| |||||||| ||||||    
T  23596677 gtgaaccattttgttcaagaattcaagaggaagaataagaaagatatt 23596724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 35132824 - 35132750
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 195  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 121 - 468
Target Start/End: Complemental strand, 8103043 - 8102696
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaagatta 220  Q
    |||||||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||  ||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaatta 8102944  T
Q  221 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 320  Q
    |||||||||| ||||||||||| ||||| || ||| | || || || ||  | ||    || ||  |||||||| | || ||||| ||||| ||||| ||    
T  8102943 ttaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtac 8102844  T
Q  321 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 420  Q
    ||| ||||| || ||||||||||||||||| || || || ||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  8102843 ttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcaggtgatacccatcttggtggtgaagattttgataacagaatg 8102744  T
Q  421 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 468  Q
    || |  |||||||||   ||||||| |||||| || ||||||||||||    
T  8102743 gttacccattttgttcaagagtttaagaggaagaacaagaaggatatt 8102696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 8017100 - 8017552
Alignment:
Q  16 gttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcatc 115  Q
    ||||| ||||| ||||| || ||| ||||||| || ||||||||||| || |||||  | || |||||| | ||  ||||||||||||  || |||        
T  8017100 gttaactacaagggtgaggacaagcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttcaa 8017199  T
Q  116 cagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaa 215  Q
    | ||||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||  ||| | ||  | ||||| ||||     
T  8017200 ctgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatgttttgag 8017299  T
Q  216 gattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggt 315  Q
     ||||| || ||||| || ||||| || ||||| || ||  | || || || ||| | ||    |||||  |||| ||| | || |||||||||||||||    
T  8017300 aattatcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgttgatctttgacttgggaggt 8017399  T
Q  316 ggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataaca 415  Q
    || ||||| ||||| |||||||||||||||||||| || || || ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  8017400 ggtacttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttgacaaca 8017499  T
Q  416 gaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatatt 468  Q
    ||||||| ||||||||||||  |||||||| |||||| || ||||||||||||    
T  8017500 gaatggttaatcattttgttcaggagtttaagaggaagaacaagaaggatatt 8017552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 39986127 - 39985708
Alignment:
Q  16 gttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcatc 115  Q
    ||||| |||||||||||||| ||| ||||||| || || || || ||||| |||||| | || |||||| | ||  |||| ||||| |  ||||||  |     
T  39986127 gttaactacaaaggtgaagataaggaatttgctgccgaagagatctcttccatggtgctaatgaagatgcgtgagattgccgaagcgtaccttggttctg 39986028  T
Q  116 cagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaa 215  Q
    |  | |||||||||||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  ||      
T  39986027 ccattaagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcg 39985928  T
Q  216 gattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggt 315  Q
     ||||| |||||||| ||||||||||| |||||||||||| | || ||||||||  | ||    || ||  |||| ||  | || |||||| | || |||    
T  39985927 aattatcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggt 39985828  T
Q  316 ggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataaca 415  Q
    || ||||| ||||| ||| | || ||||||||||| || ||||| || |||||||| || || || || || |||||||| ||||| |||||||| ||||    
T  39985827 ggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagccggagacacccatcttggaggtgaggattttgacaaca 39985728  T
Q  416 gaatggtgaatcattttgtt 435  Q
    |||||||||| || ||||||    
T  39985727 gaatggtgaaccactttgtt 39985708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 7877525 - 7877595
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 8581824 - 8581754
Alignment:
Q  373 actgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtt 443  Q
    |||||||| || ||||| || || || ||||||||||||||||||||||||||||| ||||| ||||||||    
T  8581824 actgctggagacactcacctgggaggggaagattttgataacagaatggtgaatcactttgtgtcggagtt 8581754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 17260614 - 17260484
Alignment:
Q  124 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaagattatta 223  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| |||| | ||  |  |||| |||||| | ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttattgctggcctttatgttttgaagttaatta 17260515  T
Q  224 atgagcctactgctgctgcaattgcttatgg 254  Q
    |||| |||| |||||| || ||||| |||||    
T  17260514 atgaacctattgctgcagctattgcatatgg 17260484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 10494160 - 10494240
Alignment:
Q  115 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 195  Q
    ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494160 ccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 8602350 - 8602280
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||  |||| || ||||||||||||||    
T  8602350 aagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgc 8602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 8382677 - 8382738
Alignment:
Q  130 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 8591014 - 8590945
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 190  Q
    |||||||| ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||    
T  8591014 aagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtg 8590945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 13333242 - 13333322
Alignment:
Q  115 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 195  Q
    ||||| |||||||| ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333242 ccagtcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  124 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 167  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 8659742 - 8659603
Alignment:
Q  118 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaaga 217  Q
    |||||||||||||||||||| || ||||| || |||||||||||||| ||  |||| || | |||| | ||||| ||| | ||  | |||||  |  |||    
T  8659742 gtgaagaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattccggtgccattgctggccttaatgtcattcaga 8659643  T
Q  218 ttattaatgagcctactgctgctgcaattgcttatggttt 257  Q
    | |||||||| ||||||||||| || ||||| ||||||||    
T  8659642 taattaatgaacctactgctgcagctattgcatatggttt 8659603  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 3147648 - 3147574
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 195  Q
    |||||||| |||||||| || |||||||||||||||||| |||| ||  |||| || | ||||||||||| ||||    
T  3147648 aagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttatt 3147574  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 8636135 - 8636205
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    |||||||| ||  ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636135 aagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 1301846 - 1301797
Alignment:
Q  115 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 164  Q
    |||||||  ||||||||||||||||| |||||  ||||||||||||||||    
T  1301846 ccagtgacaaatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 7877773 - 7877862
Alignment:
Q  369 agctactgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataa 458  Q
    ||||||||| || |||||||| || ||||| || || ||||||||||||||| |||| ||||| ||   |||||||| |||||| |||||    
T  7877773 agctactgccggagatactcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataa 7877862  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 8570435 - 8570374
Alignment:
Q  373 actgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgt 434  Q
    |||||||| || ||||| || || |||||||||||||||||||||||| ||| ||| |||||    
T  8570435 actgctggagacactcacctgggaggtgaagattttgataacagaatgttgactcactttgt 8570374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 8585501 - 8585541
Alignment:
Q  124 aatgctgttgttactgttcctgcttatttcaatgattctca 164  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctca 8585541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 8610044 - 8609980
Alignment:
Q  370 gctactgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgt 434  Q
    ||||||||||| |||||||| ||||| || || || |||||| |||||||||| ||||| |||||    
T  8610044 gctactgctggagatactcaccttggaggagaggactttgatcacagaatggttaatcactttgt 8609980  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 8628673 - 8628609
Alignment:
Q  356 tcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 420  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||||| || || |||||||||||||||    
T  8628673 tctttgaagttaaagccactgctggaaatactcaccttggtggagaggactttgataacagaatg 8628609  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 12235072 - 12234996
Alignment:
Q  114 tccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 190  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235072 tccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 17716485 - 17716621
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaagatta 220  Q
    |||||||| ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||  ||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  221 ttaatgagcctactgctgctgcaattgcttatggttt 257  Q
    |||||||||| |||||||| || ||||||||||||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttt 17716621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 332
Target Start/End: Original strand, 5445510 - 5445754
Alignment:
Q  88 gaagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctg 187  Q
    |||||||||||| ||| | | ||||||  |||||| ||||||||| | ||||||||||| || |||||  | || ||  | |||||||| || ||||| |    
T  5445510 gaagttgctgaaacttatttgggtcatgaagtgaacaatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaatgatgcag 5445609  T
Q  188 gtgctatttcgggtttgaatgtgttgaagattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaaca 287  Q
    |    ||| | ||||| |||||| ||| ||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |    
T  5445610 gaaaaattgccggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaa 5445709  T
Q  288 gaacgtgcttatttttgacttgggaggtggaactttcgatgtttc 332  Q
    ||| |||||| | |||||  | || |||||||| |||||||||||    
T  5445710 gaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttc 5445754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 12245198 - 12245265
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 188  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 7542605 - 7542556
Alignment:
Q  118 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 167  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542605 gtgacgaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 17648100 - 17648147
Alignment:
Q  388 catcttggtggtgaagattttgataacagaatggtgaatcattttgtt 435  Q
    |||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  17648100 catcttggaggtgaggattttaataacagaatggtgaatcactttgtt 17648147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 17666742 - 17666789
Alignment:
Q  388 catcttggtggtgaagattttgataacagaatggtgaatcattttgtt 435  Q
    |||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  17666742 catcttggaggtgaggattttaataacagaatggtgaatcactttgtt 17666789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 16657309 - 16657379
Alignment:
Q  121 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    |||||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | ||||||||||||    
T  16657309 aagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgc 16657379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 17705797 - 17705845
Alignment:
Q  388 catcttggtggtgaagattttgataacagaatggtgaatcattttgttt 436  Q
    |||||||| ||||| |||||| |||||||||||||||| || |||||||    
T  17705797 catcttggaggtgaggattttaataacagaatggtgaaccactttgttt 17705845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 4678347 - 4678420
Alignment:
Q  118 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 191  Q
    ||||||||||  ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678347 gtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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