View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_low_11 (Length: 470)

Name: NF18796_low_11
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_low_11
NF18796_low_11
[»] chr3 (3 HSPs)
chr3 (41-448)||(109527-109931)
chr3 (159-205)||(20269974-20270020)
chr3 (87-159)||(28767453-28767525)
[»] chr2 (4 HSPs)
chr2 (159-205)||(2007187-2007233)
chr2 (159-202)||(3304565-3304608)
chr2 (159-205)||(23220975-23221021)
chr2 (87-159)||(23221036-23221108)
[»] chr7 (2 HSPs)
chr7 (159-206)||(3120840-3120887)
chr7 (165-205)||(28369290-28369330)
[»] chr4 (2 HSPs)
chr4 (159-202)||(50853917-50853960)
chr4 (159-205)||(28501941-28501987)
[»] chr8 (3 HSPs)
chr8 (159-205)||(8471908-8471954)
chr8 (159-236)||(8472657-8472731)
chr8 (163-203)||(32593533-32593573)
[»] chr5 (2 HSPs)
chr5 (159-205)||(27828438-27828484)
chr5 (164-236)||(4446371-4446440)
[»] chr1 (1 HSPs)
chr1 (163-205)||(46859682-46859724)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 41 - 448
Target Start/End: Original strand, 109527 - 109931
Alignment:
Q  41 tgctgtaaaatatgtaaatttgtgtgtcgataatgaaatcatatatacaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaata 140  Q
    ||||| ||||||||||||||||||||||||||||||||||| |    | |||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  109527 tgctgcaaaatatgtaaatttgtgtgtcgataatgaaatcaca----ccccttgtatttataatggtattactgtaaatgtattaaatgtttaaggaata 109622  T
Q  141 agcactagcttagaaagtt---------------aataacaatcaatctagaaagttgtacaagtaaagtaatatctaaattaagatttttaacttaaca 225  Q
    |||||||||||||||||||               ||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||||||||    
T  109623 agcactagcttagaaagttgtatacgcgagaagtaataacaatcaatctagaaagttgtacaattaaagtaatatctaaa----gatttttaacttaaca 109718  T
Q  226 cccctcctcaaattggaagagaaagcaccgttaataatcaaatcatatgtgggtagatagtctatgaatgatagaaaacacctaaaaatgtggcacaaag 325  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||| |  | |||||||||||||||||||||||||||||||||||||||||    
T  109719 cccctcctcaaattggaagagaaagcaccgttaataatca-----tatgtggg-atct-gtctatgaatgatagaaaacacctaaaaatgtggcacaaag 109811  T
Q  326 ggacctacagtgataaacaactactgaaaaatatacaagatccttaggaaccgaatactactaataataggtggtgctgccggcggaaaatgttgtcgaa 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  109812 ggacctacagtgataaacaactactgaaaaatatacaagatccttaggaaccgaatactac---taataggtggtgctgccggcggaaaatgttgtcgaa 109908  T
Q  426 acaagtcaacaacagtgaagcac 448  Q
    |||||||||||||||||||||||    
T  109909 acaagtcaacaacagtgaagcac 109931  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 20269974 - 20270020
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||    
T  20269974 taataacaatcaatctaggaaattgtacaattaaaggaatatctaaa 20270020  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 28767453 - 28767525
Alignment:
Q  87 acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt 159  Q
    ||||| |||||||||||||||||| |   ||||||||| |||| |||| || ||||||||||| ||| |||||    
T  28767453 acaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagtt 28767525  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 2007187 - 2007233
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  2007187 taataacaatcaatctaggaagttgtacaattaaaggaatatctaaa 2007233  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 3304608 - 3304565
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatct 202  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  3304608 taataacaatcaatctaggaagttgtacaattaaaggaatatct 3304565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 23221021 - 23220975
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    ||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  23221021 taatatcaatcaatctaggaagttgtacaattaaaggaatatctaaa 23220975  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 23221108 - 23221036
Alignment:
Q  87 acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt 159  Q
    |||||||||||||||||||||||||| | || || ||| |||| ||||  | ||||||||||| ||| |||||    
T  23221108 acaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagtt 23221036  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 3120840 - 3120887
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaat 206  Q
    |||| ||||||||||||| ||||||||||| ||||| |||||||||||    
T  3120840 taatgacaatcaatctaggaagttgtacaattaaaggaatatctaaat 3120887  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 28369330 - 28369290
Alignment:
Q  165 caatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||| ||||||||||| ||||| ||||||||||    
T  28369330 caatcaatctaggaagttgtacaattaaaggaatatctaaa 28369290  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 50853960 - 50853917
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatct 202  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||    
T  50853960 taataacaatcaatctagaatgttgtacaattaaaggaatatct 50853917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 28501941 - 28501987
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||||||    
T  28501941 taattacaatcaatctaggaagttgtacaattaaaggaatatctaaa 28501987  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 8471954 - 8471908
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||||||||| ||||||||||| |||||  |||||||||    
T  8471954 taataacaatcaatctaggaagttgtacaattaaagggatatctaaa 8471908  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 8472731 - 8472657
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaattaagatttttaac-ttaacacccctcctcaa 236  Q
    ||||||||| |||||||| ||||||||||| |||||  |||||||    |||||| ||||| |||||||||||||||||    
T  8472731 taataacaaccaatctaggaagttgtacaattaaagggatatcta----aagattcttaactttaacacccctcctcaa 8472657  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 32593573 - 32593533
Alignment:
Q  163 aacaatcaatctagaaagttgtacaagtaaagtaatatcta 203  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  32593573 aacaatcaatctaggaagttgtacaattaaaggaatatcta 32593533  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 27828438 - 27828484
Alignment:
Q  159 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  27828438 taataacaatcaatctaggaagttgtacaattaagggaatatctaaa 27828484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 4446440 - 4446371
Alignment:
Q  164 acaatcaatctagaaagttgtacaagtaaagtaatatctaaattaagatttttaac-ttaacacccctcctcaa 236  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||    ||| ||||| |||||||||||||||||    
T  4446440 acaatcaatctaggaagttgtacaattaaagggatatctaaat----attcttaactttaacacccctcctcaa 4446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 46859682 - 46859724
Alignment:
Q  163 aacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 205  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||    
T  46859682 aacaatcaatctaggaagttgtacaattaaaggaatatctaaa 46859724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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