View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_14 (Length: 457)
Name: NF18796_low_14
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 45542374 - 45542127
Alignment:
| Q |
11 |
cgaagaatattggagaaattaagttccacatactataaacataaaatctgactagagtttaaggttaacatgtggatcgagcagcagacattaaacccat |
110 |
Q |
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| T |
45542374 |
cgaacaatattggagaaattaagttccacatactataaacataaaatctgactagagtttaaggttaacgtgtggatcgagcagcagacattaaacccat |
45542275 |
T |
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| Q |
111 |
aaagcatgatgtgggataatttgaagaaagatgaaaaaagaaagaatattcttatcaatatgtagtaaaaataataaaatatctacaaatcaatctatgt |
210 |
Q |
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| T |
45542274 |
aaagcatgatgtgggataatttgaagaaagatgaaaaaagaaagaatattcttatcaatatgtagtaaaaataataaaatatctacaaatcaatctatgt |
45542175 |
T |
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| Q |
211 |
ttggaatttgaataaatgaagtctaatttagtaggatgtgttgatctt |
258 |
Q |
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| T |
45542174 |
ttggaatttgaataaatgaagtctaatttagtaggatgtgttgatctt |
45542127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 254 - 457
Target Start/End: Complemental strand, 45542096 - 45541893
Alignment:
| Q |
254 |
atcttcttcattagccaatctcatgacttttagacacaaagcaaatgccagaaggcacactgttcgtccatatacacacgcattctcaattattcgcctg |
353 |
Q |
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| T |
45542096 |
atcttcttcattagccaatctcatgacttttagacacaaagcaaatgccagaaggcacactgttcgtccatatacacacgcattctcaattattcgcctg |
45541997 |
T |
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| Q |
354 |
tgacatgcccctttaacaaatcaatccaagagtttgtcatttttgttaaaatcaatgnnnnnnngtcgtggcaaattataattggttgattgtataggta |
453 |
Q |
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| T |
45541996 |
tgacatgccccattaacaaatcaatccaagagtttgtcatttttgttaaaatcaatgaaaaaaagtcgtggcaaattataattggttgattgtataggta |
45541897 |
T |
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| Q |
454 |
agca |
457 |
Q |
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| T |
45541896 |
agca |
45541893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 45548165 - 45548116
Alignment:
| Q |
288 |
cacaaagcaaatgccagaaggcacactgttcgtccatatacacacgcatt |
337 |
Q |
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| T |
45548165 |
cacaaagcgaatgccacaagacacacttttcgtccatatacatacgcatt |
45548116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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