View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_16 (Length: 434)
Name: NF18796_low_16
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 57 - 418
Target Start/End: Complemental strand, 36800394 - 36800039
Alignment:
| Q |
57 |
atttcttttggaatgatgcaatcttcttcatcaccctctgtccttggaaactacatgtgagttctttctcaattatgnnnnnnnnnnnnnnnnncgagat |
156 |
Q |
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| T |
36800394 |
atttcttttggaatgatgcaatcttcttcatcaccctctgtccttggaaactacatgtgagttctttctcaattatgtatatatatat------cgagat |
36800301 |
T |
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| Q |
157 |
gaagtgatgaacaattaactgtgtcttacgttnnnnnnnnnttggtttattttgttattataacnnnnnnnnnnnnnnnnnatgtcagcagaaataaaga |
256 |
Q |
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| T |
36800300 |
gaagtgatgaacaattaactgtgtcttacgttaaaaaaaa-ttggtttattttgttattataacttttttgttttttgtttatgtcagcagaaataaaga |
36800202 |
T |
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| Q |
257 |
ttctggagcttatgatttgggtgaattagatcaagccctttttctctatcttaatggacaaactgacccatccagtgttcaagaccaaaaacgtgagnnn |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36800201 |
ttctggagcttatgatttgggtgaattagatcaagccctttttctctatcttaatggacaaactgacccatccagtgttcaagaccaaaaacgtgagttt |
36800102 |
T |
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| Q |
357 |
nnnnnnccttccaaatcccaataatg-tttgcttgaaattcaaaaagaaggagtcttttcctt |
418 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36800101 |
ttttttcctttcaaatcccaataatgttttgcttgaaattcaaaaagaaggagtcttttcctt |
36800039 |
T |
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