View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_18 (Length: 408)
Name: NF18796_low_18
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_18 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 3879309 - 3879697
Alignment:
| Q |
20 |
aatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcg |
119 |
Q |
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| T |
3879309 |
aatgacatgtctgaattcatgagtattacgattaatacatttaaccaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttgagcg |
3879408 |
T |
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| Q |
120 |
tcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaagcactataattcta |
219 |
Q |
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| T |
3879409 |
tcgttggatcttccacatttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaagcactataattcta |
3879508 |
T |
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| Q |
220 |
ttattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttannnnnnngaatggttt |
319 |
Q |
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| T |
3879509 |
ttattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttatttttttgaatggttt |
3879608 |
T |
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| Q |
320 |
cctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaata |
408 |
Q |
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| T |
3879609 |
cctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaata |
3879697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 3865378 - 3865513
Alignment:
| Q |
71 |
gccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaag |
170 |
Q |
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| T |
3865378 |
gccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaatattagattggtgtactgtcgcaag |
3865477 |
T |
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| Q |
171 |
tatgtttctgcttcattttctctctccccagaaaag |
206 |
Q |
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| T |
3865478 |
tatgtttctgcttcattttctctctccccagaaaag |
3865513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 3865609 - 3865706
Alignment:
| Q |
311 |
gaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaata |
408 |
Q |
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| T |
3865609 |
gaatggtttccttggcagattagcagatttgaatttgagagctatatcgctttcttctatacaagtgtctaactgctctgtactccaccggatcaata |
3865706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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