View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_24 (Length: 338)
Name: NF18796_low_24
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 55014231 - 55014553
Alignment:
| Q |
1 |
aattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttataggaagtcctagat |
100 |
Q |
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| T |
55014231 |
aattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttataggaagtcctagat |
55014330 |
T |
|
| Q |
101 |
ggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatagagtacactcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55014331 |
ggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatcgagtacactcctg |
55014430 |
T |
|
| Q |
201 |
gtggactcatatacagaccaggtggaagcaacttacaacatgcaacttcaattgctttccttgagttagtctacgccaaatacttatcccgcacgtcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55014431 |
gtggactcatatacagaccaggtggaagcaacttacaacatgcaacttcaattgctttccttgagttagtctacgccaaatacttatcccgcacgtcaca |
55014530 |
T |
|
| Q |
301 |
aaccatcaattgtggcaatgttt |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
55014531 |
aaccatcaattgtggcaatgttt |
55014553 |
T |
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