View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_low_26 (Length: 336)

Name: NF18796_low_26
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_low_26
NF18796_low_26
[»] chr7 (3 HSPs)
chr7 (10-179)||(45541753-45541922)
chr7 (240-321)||(45541611-45541692)
chr7 (116-148)||(40185744-40185776)
[»] chr3 (2 HSPs)
chr3 (108-160)||(48688137-48688190)
chr3 (106-143)||(5117229-5117266)
[»] chr6 (3 HSPs)
chr6 (108-148)||(9973241-9973281)
chr6 (106-144)||(9333982-9334020)
chr6 (106-143)||(10497155-10497192)
[»] chr5 (2 HSPs)
chr5 (106-146)||(23118051-23118091)
chr5 (107-143)||(42854323-42854359)
[»] chr4 (5 HSPs)
chr4 (106-160)||(46434745-46434800)
chr4 (106-144)||(1657032-1657070)
chr4 (106-143)||(45029608-45029645)
chr4 (106-147)||(56096225-56096266)
chr4 (108-148)||(6520094-6520134)
[»] chr2 (2 HSPs)
chr2 (102-140)||(5028873-5028911)
chr2 (107-148)||(4238781-4238822)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 45541922 - 45541753
Alignment:
Q  10 attatacttggttgattgtataggtaagcaataaaaataaatctttttaaaaacaacgtgagacccatcatgttttatcgtatgtggatatggattagga 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  45541922 attataattggttgattgtataggtaagcaataaaaataaatctttttaaaaacaatgtgagacccatcatgttttatcgtatgtggatatgaattagga 45541823  T
Q  110 caattcataatatatgtaaggtttgtggttcgaactccgtctccacaaaaataaaatgtggattaatcac 179  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||| |||||| | ||||||||||||||||    
T  45541822 caatgcataatatatggaaggtttgtggttcgaactccatctcctcaaaaacagaatgtggattaatcac 45541753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 45541692 - 45541611
Alignment:
Q  240 ctagcaatcttgattacctatgagcattgctaatttgctatttgtagagtaatactaaagatttaaacaagaaagagaaaat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45541692 ctagcaatcttgattacctatgagcattgctaatttgctatttgtagagtaatactaaagatttaaacaagaaagagaaaat 45541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 40185776 - 40185744
Alignment:
Q  116 ataatatatgtaaggtttgtggttcgaactccg 148  Q
    ||||||||||||||||||| |||||||||||||    
T  40185776 ataatatatgtaaggtttggggttcgaactccg 40185744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 48688137 - 48688190
Alignment:
Q  108 gacaattcataatatatgtaaggtttgtggttcgaactcc-gtctccacaaaaa 160  Q
    |||||| |||||||||||||||||||| |||||||||||| ||| |||||||||    
T  48688137 gacaatgcataatatatgtaaggtttgaggttcgaactccagtcaccacaaaaa 48688190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 5117229 - 5117266
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaa 143  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  5117229 aggacaatacataatatatgtaaggtttgaggttcgaa 5117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 9973241 - 9973281
Alignment:
Q  108 gacaattcataatatatgtaaggtttgtggttcgaactccg 148  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  9973241 gacaatgcataatatatgtaaggtttggggttcgaactccg 9973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 9334020 - 9333982
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaac 144  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  9334020 aggacaatgcataatatatgtaaggtttggggttcgaac 9333982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 10497192 - 10497155
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaa 143  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  10497192 aggacaatgcataatatatgtaaggtttgcggttcgaa 10497155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 23118091 - 23118051
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaactc 146  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  23118091 aggacaatgcataatatatgtaaggtttggggttcgaactc 23118051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 42854359 - 42854323
Alignment:
Q  107 ggacaattcataatatatgtaaggtttgtggttcgaa 143  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  42854359 ggacaatgcataatatatgtaaggtttgaggttcgaa 42854323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 46434800 - 46434745
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaactccg-tctccacaaaaa 160  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| || |||||||||    
T  46434800 aggacaatgcataatatatgtaaggtttgaggttcaaactccgatcaccacaaaaa 46434745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 1657070 - 1657032
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaac 144  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  1657070 aggacaatgcataatatatgtaaggtttggggttcgaac 1657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 45029645 - 45029608
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaa 143  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  45029645 aggacaatgcataatatatgtaaggtttggggttcgaa 45029608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 56096225 - 56096266
Alignment:
Q  106 aggacaattcataatatatgtaaggtttgtggttcgaactcc 147  Q
    |||||||| |||||||||||||||||| ||||||| ||||||    
T  56096225 aggacaatgcataatatatgtaaggttcgtggttcaaactcc 56096266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 6520094 - 6520134
Alignment:
Q  108 gacaattcataatatatgtaaggtttgtggttcgaactccg 148  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  6520094 gacaatgcataatatatgcaaggtttgaggttcgaactccg 6520134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 5028873 - 5028911
Alignment:
Q  102 gattaggacaattcataatatatgtaaggtttgtggttc 140  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  5028873 gattaggacaatgcataatatatgtaaggtttggggttc 5028911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 4238781 - 4238822
Alignment:
Q  107 ggacaattcataatatatgtaaggtttgtggttcgaactccg 148  Q
    ||||||| |||||||||||||||||| | |||||||||||||    
T  4238781 ggacaatgcataatatatgtaaggttcggggttcgaactccg 4238822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University