View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_28 (Length: 325)
Name: NF18796_low_28
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 50240164 - 50239907
Alignment:
| Q |
18 |
atataaaccataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtat |
117 |
Q |
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| T |
50240164 |
atataaaccataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtat |
50240065 |
T |
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| Q |
118 |
agcaaaaagagtgaaaaatattggnnnnnnngtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagataatttgaatggatgaattagag |
217 |
Q |
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| T |
50240064 |
agcaaaaagagtgaaaaatattggtttttttgtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagat-atttgaatggatgaatt--ag |
50239968 |
T |
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| Q |
218 |
aattgtgatgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtag |
278 |
Q |
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| T |
50239967 |
aattgtgatgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtag |
50239907 |
T |
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