View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_3 (Length: 739)
Name: NF18796_low_3
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 240 - 690
Target Start/End: Original strand, 5213267 - 5213715
Alignment:
| Q |
240 |
aaaacaacatcttatattagataagataaataacgtacaagtataaggagaaataacgtgttaggacatttctctttcactttcttaaaacaacataaat |
339 |
Q |
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| T |
5213267 |
aaaaaaacatcttatattagataagataaataacgtacaagtataaggagaaataacgtgttaggacatttccctttcactttcttaaaacaacataaat |
5213366 |
T |
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| Q |
340 |
aacaaaaccaatcaaaatttaggcatcactaaactttgagaaactaaaaatcaacaaagcattaccaaaccaataacttaatccaagcaaccaagcaaat |
439 |
Q |
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| T |
5213367 |
aacaaaaccaatcaagatttaggcaacactaaactttgagaaactaaaaatcaacaaagcattaccaaaccaataacttaatccaagcaaccaagcaaat |
5213466 |
T |
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| Q |
440 |
ttctttcacatgtgaatgtgataagtgagttgagataccacaatctttaaacctatcaaataacgatcaatgctatatcttttggatgcacatataaatt |
539 |
Q |
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| T |
5213467 |
ttctttcacatgtgaatgtgataagtgagttgagataccacaatctttaaacctatcaaataacgatcaatgctatatcttttggatgcacatataaatt |
5213566 |
T |
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| Q |
540 |
acaccatatgtgaatgaattaattgctgacatcacaagagaatgtattcccattagttgacttgagaagagagagtggtttgcagcgggaatgaattttc |
639 |
Q |
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| T |
5213567 |
acaccatatgtgaatgaattaattgctgacatcacaagagaatgtattcccattagttgacttgaga--agagagtggtttgcagcgggaatgaattttc |
5213664 |
T |
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| Q |
640 |
tctagtgagattttcactagattttctccaatttaaaccccaccattgaaa |
690 |
Q |
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| T |
5213665 |
tctagtgagattttcactagattttctccaatttaaatcccaccattgaaa |
5213715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 5211551 - 5211793
Alignment:
| Q |
16 |
atgagcatgtatgatgagaagagtgtgtagcaagcaacactatgtaaaacatcnnnnnnnncaacacacgtttctgtcggttgaaattaaatggatttta |
115 |
Q |
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| T |
5211551 |
atgagtatgtatgatgagaagagtgtgtagcaagcaacactatgtaaaacaa-ttttttttcaacacacgtttctgtcggttgaaattaaatggatttta |
5211649 |
T |
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| Q |
116 |
ctaaattatgaaggtttcttataaatttaacataatatatttaaattttaaccaataaaagtgtatatgttatgatcacctt-aaaataatgtatgtgtt |
214 |
Q |
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| T |
5211650 |
ctaaattatgaaggtttcttataaatttaacataatatattttaattttaaccgataaaagtgtatatgttatgatcaccttaaaaatagtgtatgtgtt |
5211749 |
T |
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| Q |
215 |
ataaatagtgtgtttttatttatagaaaacaacatcttatatta |
258 |
Q |
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| T |
5211750 |
ataaatagtgtgtttttatttataggaaacaacatcttatatta |
5211793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 726
Target Start/End: Original strand, 5213745 - 5213783
Alignment:
| Q |
688 |
aaatcatctctatcccttgaaccacctcatatcagattt |
726 |
Q |
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| T |
5213745 |
aaattatctctatcccttgaaccacctcatatcagattt |
5213783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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