View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_30 (Length: 314)
Name: NF18796_low_30
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_30 |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0247 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 22326 - 22634
Alignment:
| Q |
1 |
actttatcatctcgttcacattttgttcatgattcaaataaagatcgttatgttcccatatatcaagatgattcatcagagactatggttccaagtcaaa |
100 |
Q |
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| T |
22326 |
actttatcatctcgttcacattttgttcatgattcaaataaagatcgttatgttcccatatatcaagatgattcatcagagactatggttccaagtcaaa |
22425 |
T |
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| Q |
101 |
ttggtggagattatgcctctgctgtacaaccaagtcttggtaataatgtccaaacaccgtgtgcaatgtggtcagacagtttatgggacatggggagcag |
200 |
Q |
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| T |
22426 |
ttggtggagattatgcttctgctgtacaaccaagtcttggtaataatgtccaaacaccgtgtgcaatgtggtcagacagtttatgggacatggggagcag |
22525 |
T |
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| Q |
201 |
tgagaaaattggctcatgctcttcattacaagaggtgaacaacttcaacatggattttcctgatgactccttttgggatttcaacttttctgattttgat |
300 |
Q |
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| T |
22526 |
tgagaaaattggctcatgctcttcattacaagaggtgaacaacttcaacatggattttcctgatgactccttttgggatttcaacttttctgattttgaa |
22625 |
T |
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| Q |
301 |
attcttcga |
309 |
Q |
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| T |
22626 |
tttcttcga |
22634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 306
Target Start/End: Complemental strand, 33821456 - 33821211
Alignment:
| Q |
73 |
tcatcagagactatggttccaagtcaaattggtggagattatgcctctgctgtacaaccaagtcttggtaataatgtccaaacaccgtgtgcaatgtggt |
172 |
Q |
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| T |
33821456 |
tcatcagagattatggtttcaaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaat---gttcccgtaccatgtggaatgtggt |
33821360 |
T |
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| Q |
173 |
cagacagtttatgggacatgggg---------agcagtgagaaaattggctcatgctcttcattacaagaggtgaacaacttcaacatggattttcc--- |
260 |
Q |
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| T |
33821359 |
cggacagtttatggaacttgggggaacaagtaaacattgacaaaattggctcatgctcttcgttacaagaagagaacaactttaatatggaggttccaaa |
33821260 |
T |
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| Q |
261 |
---tgatgactccttttgggatttcaacttttctgattttgatattctt |
306 |
Q |
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| T |
33821259 |
tgttgatgacttcttttgggatttcaaccttgatgattttgattttctt |
33821211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 33762406 - 33762369
Alignment:
| Q |
198 |
cagtgagaaaattggctcatgctcttcattacaagagg |
235 |
Q |
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| T |
33762406 |
cagtgagaaaattggctcatgctcttcattacaagagg |
33762369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 21305587 - 21305545
Alignment:
| Q |
198 |
cagtgagaaaattggctcatgctcttcattacaagaggtgaac |
240 |
Q |
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| T |
21305587 |
cagtgagaaaattgggtcatgctcttcattacaagaggagaac |
21305545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 148461 - 148421
Alignment:
| Q |
200 |
gtgagaaaattggctcatgctcttcattacaagaggtgaac |
240 |
Q |
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| T |
148461 |
gtgagaaaattggttcaggctcttcattacaagaggagaac |
148421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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