View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18796_low_33 (Length: 302)
Name: NF18796_low_33
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 298
Target Start/End: Original strand, 52444737 - 52445002
Alignment:
| Q |
32 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattcacaaacaataacaataatagattgctctatgagcaaacataaacacacaaaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52444737 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattca-aaacaataacaataatagattgctctatgagcaaacataaacacaaaaaa |
52444835 |
T |
|
| Q |
132 |
tgcaaaaagtacttgctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52444836 |
tgcaaaaagtactttctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
52444935 |
T |
|
| Q |
232 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgtgaaagta |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52444936 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgcgaaagta |
52445002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University