View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_34 (Length: 301)
Name: NF18796_low_34
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 128 - 286
Target Start/End: Original strand, 7862385 - 7862544
Alignment:
| Q |
128 |
gatttgttctcctttcctcgacacgaatcaggacaatggacaacaagtagtggaagggcagaattttaaccaaattagaacacacccttaattgtttttc |
227 |
Q |
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| T |
7862385 |
gatttgttctcctttcctcgacacgaatcaggacaatggacaacaagtagtggaagggcagaattttaaccaaattaggacacacccttaattgtttttc |
7862484 |
T |
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| Q |
228 |
tta-gaaataaaatctttgtctggctccacctaatagctcatacttttaagagaattaat |
286 |
Q |
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| T |
7862485 |
ttatgaaataaaatctttgtctgcctccacctaatagctcatacttttaagagaattaat |
7862544 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 7862266 - 7862337
Alignment:
| Q |
9 |
gagatgaacaagctaactccatatagttaggaagaacaataatgttggcggggttattggttaatcttatag |
80 |
Q |
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| T |
7862266 |
gagatgaacaagctaactccatatagttaggaagaacaataatgttggcggggttattggttaatcttatag |
7862337 |
T |
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