View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_35 (Length: 294)
Name: NF18796_low_35
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 52444776 - 52445033
Alignment:
| Q |
18 |
acttaattcacaaacaataacaataatagattgctctatgagcaaacataaacacacaaaatgcaaaaagtacttgctccatgagcaaacataaacaagt |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52444776 |
acttaattca-aaacaataacaataatagattgctctatgagcaaacataaacacaaaaaatgcaaaaagtactttctccatgagcaaacataaacaagt |
52444874 |
T |
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| Q |
118 |
tccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccacaacacccgcaacaccctcccctcctggtagcctctcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444875 |
tccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccacaacacccgcaacaccctcccctcctggtagcctctcatg |
52444974 |
T |
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| Q |
218 |
caaaaaggcatagagctgcgtgaaagtattatggagcctcccatctaagctggcaaaga |
276 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
52444975 |
caaaaaggcatagagctgcgcgaaagtagcatggagcctcccatctaagctggcaaaga |
52445033 |
T |
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