View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_39 (Length: 279)
Name: NF18796_low_39
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 11906158 - 11906425
Alignment:
| Q |
18 |
catagatggtcatgtatgatatttcttttctgtttactgagatttatagtactgcaccttctgttttgaaaaagaaatactagcaataaaaaatcacatt |
117 |
Q |
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| T |
11906158 |
catagatggtcatgtatgatatttcttttctgtttattgagatttgtagtactgcaccttctgttttaaaaaagaaatactagcaataaaaaatcacatt |
11906257 |
T |
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| Q |
118 |
caatttctctcacctat----tgatataccataccaccataatattgatcattgcatattaagatataaaataagtaaatcatatcaaactattaagaga |
213 |
Q |
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| T |
11906258 |
caatttctctcacctatatattgatataccataccaccataatattgatcattgcatattaagatataaaataagtaaatcatatcaaactattaagaga |
11906357 |
T |
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| Q |
214 |
taaagaaaaacttaaaactactggagctaaatgtacctcagccctcagggcttc--aatatgtaccca |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11906358 |
taaagaaaaacttaaaactactggagctaaatgtacctcagccctcagggcttcaaaatatgtaccca |
11906425 |
T |
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