View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_low_4 (Length: 660)

Name: NF18796_low_4
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_low_4
NF18796_low_4
[»] chr4 (23 HSPs)
chr4 (1-645)||(27425001-27425645)
chr4 (1-539)||(27566258-27566791)
chr4 (226-502)||(27414901-27415176)
chr4 (226-645)||(27422423-27422812)
chr4 (552-642)||(27414782-27414872)
chr4 (6-106)||(27412400-27412500)
chr4 (435-576)||(27419654-27419797)
chr4 (226-546)||(27570598-27570929)
chr4 (5-106)||(27415347-27415452)
chr4 (5-70)||(27420168-27420233)
chr4 (314-430)||(27570930-27571046)
chr4 (226-389)||(27412102-27412265)
chr4 (5-106)||(27570361-27570463)
chr4 (226-302)||(27419887-27419963)
chr4 (495-541)||(27412018-27412064)
chr4 (17-70)||(27516917-27516970)
chr4 (58-119)||(27563709-27563770)
chr4 (17-75)||(27466588-27466646)
chr4 (11-104)||(27422949-27423044)
chr4 (17-75)||(27473661-27473719)
chr4 (6-75)||(27557259-27557329)
chr4 (281-335)||(27564028-27564082)
chr4 (610-642)||(27566860-27566892)


Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Complemental strand, 27425645 - 27425001
Alignment:
Q  1 attggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaagaatatggaaaaactgttggctactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27425645 attggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataagagaatatggaaaaactgttggctactt 27425546  T
Q  101 gaatgactagtgaacgagaaataatctacaaaggagacaagatcatagataagatcgcatggaattgtcttagataatacaccaacatatatcaccctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27425545 gaatgactagtgaacgagaaataatctacaaaggagacaagatcatagataagatcgcatggaattgtcttagataatacaccaacatatatctccctac 27425446  T
Q  201 atgaaaacaggtttatcaatgcaagagaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  27425445 atgaaaacaggtttatcaatgcaagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatca 27425346  T
Q  301 tggagtttgtctggcaaaaatataaattgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaac 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425345 tggagtttgtctggcaaaaatataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaac 27425246  T
Q  401 tataaatcagttcctacgcaagctttacaagtggcacataaatatgatttatttagctggtatatgtatattagtttccttgtcaattagaagaaagatg 500  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425245 tataaatcaggtcctacgcaagctttacaagtggcacataaatatgatttatttagctggtatatgtatattagtttccttgtcaattagaagaaagatg 27425146  T
Q  501 tgagatgtctaaaccatgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaatccactgtctttaatttttccat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425145 tgagatgtctaaaccatgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaatccactgtctttaatttttccat 27425046  T
Q  601 agttgtgttacaaagtggggtatttgcatgttcttccatttaact 645  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  27425045 agttgtgttacaaagtggggtatttgaatgttcttccatttaact 27425001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 27566258 - 27566791
Alignment:
Q  1 attggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaagaatatggaaaaactgttggctactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||    
T  27566258 attggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtaaccatgaatatatatagataaaagaatattgaaaaactgttggctactt 27566357  T
Q  101 gaatgactagtgaacgagaaataatctacaaaggagacaagatcatagataagatcgcatggaattgtcttagataatacaccaacatatatcaccctac 200  Q
    |||||| | ||||| |||||| |||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||| |  ||||||||| ||    
T  27566358 gaatgatttgtgaaggagaaagaatctacaaaggagacaagagcatatacaagatcacatggaattgtcttagataatacaccagc--atatcaccccac 27566455  T
Q  201 atgaaaacaggtttatcaatgcaagagaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatca 300  Q
       ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| | |    
T  27566456 caaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgcaaatttaa 27566555  T
Q  301 tggagtttgtctggcaaaa--atataaattgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctga 398  Q
    |||| ||||||  | ||||  ||||||| |||||||  ||||||||||||||||||||||| ||||| |||||| | ||   ||||||||  | ||||||    
T  27566556 tggaatttgtcctgaaaaactatataaaatgtggtttatagtggtttgtgatcttgtgttctatattggttctcttctt---tcctaacatagtttctga 27566652  T
Q  399 actataaatcagttcctacgc-aagctttacaagtggcacataaatatgatttatttagctggtatatgtatattagtttccttgtcaattagaagaaag 497  Q
      ||| |||||  ||  || | ||||||||||||| |||||||||| | |  ||||||  |||| ||| || ||||||| |  ||||||||| ||||||     
T  27566653 gatatcaatcaagtcacactcaaagctttacaagttgcacataaatgtaa--tatttatttggtgtattta-attagttgcaatgtcaattacaagaaac 27566749  T
Q  498 atgtgagatgtctaaaccatgtctaccattgcattagctata 539  Q
    ||  |||||||||||| |||||||||||||| ||||||||||    
T  27566750 atacgagatgtctaaagcatgtctaccattggattagctata 27566791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 226 - 502
Target Start/End: Complemental strand, 27415176 - 27414901
Alignment:
Q  226 agaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatcatggagtttgtctggcaaaaatataa 325  Q
    ||||||||||||| |||||| |||||| |||  |||||| ||||| |||| ||| || ||||||||||||||||||| || |||||| | || |||||||    
T  27415176 agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatgaagcttgtcttgtaataatataa 27415077  T
Q  326 attgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcagttcctacgcaagctt 425  Q
    | |||||||| ||| ||    ||||||||||||||| ||| |||||| ||||||||||| |||||| |||||| ||||||||||| |||||| |||||||    
T  27415076 aatgtggttcatagaggcccatgatcttgtgttcaaaattggttctc-tttttcctcctcacactgtttctgagctataaatcaggtcctactcaagctt 27414978  T
Q  426 tacaagtggcacataaatatgatttatttagctggtatatgtatattagtttccttgtcaattagaagaaagatgtg 502  Q
    ||||||| ||||||| || |||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  27414977 tacaagttgcacatatatgtgatgtatttagcaggtatatgtatattagttgccttgtcatttagaagaaagatgtg 27414901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 226 - 645
Target Start/End: Complemental strand, 27422812 - 27422423
Alignment:
Q  226 agaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatcatggagtttgtctggcaaaaatataa 325  Q
    ||||||||||||| |||||  || ||  |||| | |||||||| | |||||||  |||||||||||||||| |  |||||| ||||  ||||||||||||    
T  27422812 agaaagtttaattgaccttcatatttgattaggatggcagggatcgcaaagttttgttctggtatgcaaattttgtggagtctgtcatgcaaaaatataa 27422713  T
Q  326 attgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcagttcctacgcaagctt 425  Q
    | |||||||| |||||| |  || |||||||||||||||  |||||| | | ||||||| ||||||                   |||| || ||||| |    
T  27422712 aatgtggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactg-------------------ttccaacacaagcct 27422632  T
Q  426 tacaagtggcacataaatatga--tttatttagctggtatatgtatattagtttccttgtcaattagaagaaagatgtgagatgtctaaaccatgtctac 523  Q
     |||||| ||||| |||| |||  | ||||||||||||| ||||||||||| |      |||||||||||||| || ||||||||||||   ||||| ||    
T  27422631 aacaagttgcacacaaatctgagatgtatttagctggtagatgtatattagctataacatcaattagaagaaacatatgagatgtctaatggatgtcaac 27422532  T
Q  524 cattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaatccactgtctttaatttttccatagttgtgttacaaagtggggtat 623  Q
    ||||| |||||||||| || ||          |||||||||||||||||| |||||||||||||||||||||||| |   ||||||||||||||||||||    
T  27422531 cattggattagctatagcagaa----------aacatcaggtttctttcatcaatccactgtctttaatttttcctt---tgtgttacaaagtggggtat 27422445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 552 - 642
Target Start/End: Complemental strand, 27414872 - 27414782
Alignment:
Q  552 aacaaacatcaggtttctttcaccaatccactgtctttaatttttccatagttgtgttacaaagtggggtatttgcatgttcttccattta 642  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||    
T  27414872 aacaaacatcaagtttctttcaccaatccactgtctttaatttttccttagttgtgttacagagtagggtatgtgcatgttcttccattta 27414782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 27412500 - 27412400
Alignment:
Q  6 aatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaagaatatggaaaaactgttggctacttgaatg 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||| || ||||  |||||||||||||||    
T  27412500 aatggtttaggatgtgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatg 27412401  T
Q  106 a 106  Q
    |    
T  27412400 a 27412400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 435 - 576
Target Start/End: Complemental strand, 27419797 - 27419654
Alignment:
Q  435 cacataaatatgatttattt--agctggtatatgtatattagtttccttgtcaattagaagaaagatgtgagatgtctaaaccatgtctaccattgcatt 532  Q
    |||||||||||||| ||| |  || ||||| ||||||||| | | |  |||||||||||||||| |||||||||||||||| ||||||||| |||| |||    
T  27419797 cacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggatt 27419698  T
Q  533 agctataccaaaattcaataacaaacatcaggtttctttcacca 576  Q
    | ||||||| |||| ||| || ||||||||||||||||||||||    
T  27419697 atctatacccaaatgcaagaaaaaacatcaggtttctttcacca 27419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 546
Target Start/End: Original strand, 27570598 - 27570929
Alignment:
Q  226 agaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatcatggagtttgtctggcaaaaat---a 322  Q
    ||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || |||||||||||||||||||||||| |||| ||||||||   |    
T  27570598 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaataaaa 27570697  T
Q  323 taaattgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctga---actataaatcagttcctacgc 419  Q
    |||| |||||||  || ||  |  ||| |||| |||||| |||  || || | || |||||||||||||  ||| |    |||  ||| || |||||| |    
T  27570698 taaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcctcctaacactgtctcttagctgctaacaattaggtcctacac 27570797  T
Q  420 aagctttacaagtggcacataaatatg--atttatttagctggtatatgtatattagtttccttgtcaattagaagaa---agatgtgagatgtctaaac 514  Q
    ||||||||||||| |||||||||| ||  || |||| |  ||||| ||||||||||| | | ||||||||| ||||||   | |||||||||||| | |     
T  27570798 aagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcgagag 27570897  T
Q  515 catgtctaccattgcattagctataccaaaat 546  Q
    |||||||||||||| ||||| |||| ||||||    
T  27570898 catgtctaccattggattagttataacaaaat 27570929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 27415452 - 27415347
Alignment:
Q  5 gaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaaga----atatggaaaaactgttggctactt 100  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||||    |||| || |||| |||||||||||    
T  27415452 gaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatataaatagatgaaagaattcatattgagaaacagttggctactt 27415353  T
Q  101 gaatga 106  Q
    ||||||    
T  27415352 gaatga 27415347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 27420233 - 27420168
Alignment:
Q  5 gaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagat 70  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  27420233 gaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatatatatagat 27420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 27570930 - 27571046
Alignment:
Q  314 gcaaaaatataaattgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcagttc 413  Q
    |||||||||||||  ||||||| |||| ||||||||||||| ||| |||||| |||||| | || |||||||||||||||||||| |||||| |||| ||    
T  27570930 gcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgcttctgatctataattcaggtc 27571029  T
Q  414 ctacgcaagctttacaa 430  Q
    |||| || | |||||||    
T  27571030 ctactcatgatttacaa 27571046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 27412265 - 27412102
Alignment:
Q  226 agaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatcatggagtttgtctggcaaaaatataa 325  Q
    ||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || |||||||||||||||||||||||| ||||  |||||||| ||    
T  27412265 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttacaaaaataaaa 27412166  T
Q  326 attgtggttcctagtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacac 389  Q
    | | |||||| |||| | |   | |||||||||||||||  |||| | | ||||||||| ||||    
T  27412165 aatttggttcatagtagctcaagttcttgtgttcaatatcggttcgcttctttcctcctcacac 27412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 27570361 - 27570463
Alignment:
Q  5 gaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaagaat-atggaaaaactgttggctacttgaa 103  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| || | | ||||||||||| ||||||||| || || ||||  |||||||||||||    
T  27570361 gaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaa 27570460  T
Q  104 tga 106  Q
    |||    
T  27570461 tga 27570463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
Q  226 agaaagtttaattaaccttgttacttatttagcaaggcagggaccacaaagttccgttctggtatgcaaatatcatg 302  Q
    ||||||||||||| |||||| |||||| |||  |||||||||||| | |||||| ||||||||| ||||||||||||    
T  27419963 agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg 27419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 27412064 - 27412018
Alignment:
Q  495 aagatgtgagatgtctaaaccatgtctaccattgcattagctatacc 541  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  27412064 aagatgtgagatgtctaaagcatgtctaccattggattagctatacc 27412018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27516917 - 27516970
Alignment:
Q  17 atgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagat 70  Q
    ||||||||||||||||||||| ||||||||||| |||| | |||||||||||||    
T  27516917 atgtgaatgatttgtgttggtgctaaatgcttgcagccatgaatatatatagat 27516970  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 27563709 - 27563770
Alignment:
Q  58 aatatatatagataaaagaatatggaaaaactgttggctacttgaatgactagtgaacgaga 119  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||||| | ||||| ||||    
T  27563709 aatatatatagataaaagaatattgcaaaactattggctacttgaatgattggtgaaggaga 27563770  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 27466646 - 27466588
Alignment:
Q  17 atgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaag 75  Q
    ||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||| ||||    
T  27466646 atgtgaatgatttgtgttggtgctaaaggcttgcagccatgaatatatatagatgaaag 27466588  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27423044 - 27422949
Alignment:
Q  11 tttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatat--atatagataaaagaatatggaaaaactgttggctacttgaat 104  Q
    |||||||||||||||||| | |||||| ||||||| || || ||| ||| ||  |||||||||||||||| | || ||||  ||||||||||||||    
T  27423044 tttaggatgtgaatgattagagttggttctaaatggttctaacctataaaatttatatagataaaagaattttgagaaaccattggctacttgaat 27422949  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 27473719 - 27473661
Alignment:
Q  17 atgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataaaag 75  Q
    ||||||||||||||||||| | ||||| ||||| |||| | ||||||||||||| ||||    
T  27473719 atgtgaatgatttgtgttgatgctaaaggcttgcagccatgaatatatatagatgaaag 27473661  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 27557329 - 27557259
Alignment:
Q  6 aatggtttaggatgtgaatgattt-gtgttggtcctaaatgcttgtagcctttaatatatatagataaaag 75  Q
    |||| |||||| |||||||||||| |||||||||||||||||||| | |  | ||||||||||||| ||||    
T  27557329 aatgctttaggttgtgaatgattttgtgttggtcctaaatgcttgcaactatgaatatatatagatgaaag 27557259  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 27564028 - 27564082
Alignment:
Q  281 gttctggtatgcaaatatcatggagtttgtctggcaaaaatataaattgtggttc 335  Q
    |||||||| ||| ||| |||||| |||||||| ||||||||||||| ||||||||    
T  27564028 gttctggtgtgcgaatttcatggggtttgtcttgcaaaaatataaaatgtggttc 27564082  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 610 - 642
Target Start/End: Original strand, 27566860 - 27566892
Alignment:
Q  610 acaaagtggggtatttgcatgttcttccattta 642  Q
    |||||||||||||| ||||||||||||||||||    
T  27566860 acaaagtggggtatgtgcatgttcttccattta 27566892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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