View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_40 (Length: 273)
Name: NF18796_low_40
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 53103991 - 53104236
Alignment:
| Q |
18 |
atattatcattcttgtctgcaaatatctgtttttcatccactagctgaagagtgaaaacaatttatgaagaatatgcgatgaacatgacataagaaataa |
117 |
Q |
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| T |
53103991 |
atattatcattcttgtctgcaaatatctgtttttcatccactagctgaagagtgaaaacaatttatgaagaatatgtgatgaacatgacataagaaataa |
53104090 |
T |
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| Q |
118 |
tccaaaacacctaatattgaaaccacaggtcaattgcagctgtggagtggcatgcatggatgaatattcaccttcaggggtggcttttgtcttgctcgag |
217 |
Q |
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| T |
53104091 |
ttcaaaacacctaatattgaaaccacaggtcaattgcagcagtggagtggcatgcatggatgaatattcaccttcaggagtggcttttgtcttgctcgag |
53104190 |
T |
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| Q |
218 |
caagagaaactggcatgtccaagcctatttcctcttcctttttcat |
263 |
Q |
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| T |
53104191 |
caagagaaactggcatggtaaagcctatttccttttcctttttcat |
53104236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 43916538 - 43916703
Alignment:
| Q |
18 |
atattatcattcttgtctgcaaatatctgtttttcatccactagctgaagagtgaaaacaatttatgaagaatatgcgatgaacatgacataagaaataa |
117 |
Q |
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| T |
43916538 |
atattatcattcttgtctgcaaatatctgattttcatccactagctgaagaatgaaaacaatttataaagaatatgtgatgaacacaacataagaaataa |
43916637 |
T |
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| Q |
118 |
tccaaaacacctaatattgaaaccacaggtcaattgcagctgtggagtggcatgcatggatgaata |
183 |
Q |
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| T |
43916638 |
tccaaaacacctaatattgaaaccacaggtcaattgcagctgtggagtggcatgcatagatgaata |
43916703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 43916875 - 43916951
Alignment:
| Q |
187 |
accttcaggggtggcttttgtcttgctcgagcaagagaaactggcatgtccaagcctatttcctcttcctttttcat |
263 |
Q |
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| T |
43916875 |
accttcaggagtggcttttgtcttgctcgagcaagagaaactggcatgctaaagcctatttccttttcctttttcat |
43916951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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