View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_41 (Length: 273)
Name: NF18796_low_41
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 37497813 - 37497575
Alignment:
| Q |
5 |
accacaatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaag |
104 |
Q |
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| T |
37497813 |
accacaatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaag |
37497714 |
T |
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| Q |
105 |
aggcacaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgnnnnnnnggagttatttttattgggtgtagggagag |
204 |
Q |
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| T |
37497713 |
cggcacaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgaaaaaaagaagttatctttatt-------------g |
37497627 |
T |
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| Q |
205 |
ggtgtaaaaattaaagaatgataattataaaatcaaagttcattgataaagt |
256 |
Q |
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| T |
37497626 |
ggtgtaaaaattaaagaatgataattataaaatcaaagttcattgataaagt |
37497575 |
T |
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