View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_47 (Length: 253)
Name: NF18796_low_47
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25362152 - 25361932
Alignment:
| Q |
1 |
gtcgggacactctgcccggagcatacttgtggaagattgttcgctaacaagattttcaagtctaaccgggttgcaaaagtcgtagtaaaacacaataaca |
100 |
Q |
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| T |
25362152 |
gtcgggacactctgcccggagcatacctgtggaagattgttcgctaacaagattttcaagtctaagcgggttgcaaaagtcgtagtaaaacacaataaca |
25362053 |
T |
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| Q |
101 |
aagaacatcgggcaatacaacagcttccaacagctgtacctaaaaagagggtaagtttatttgtattatgctaaattaattgttcttcattgttattgtg |
200 |
Q |
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| T |
25362052 |
aagaacaacgggcaatacaacagcttccaacagctgtacctaaaaagagggtaagtttatttgtattatgctaaattaattgttcttcattgttattgtg |
25361953 |
T |
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| Q |
201 |
tttggtatatataacttgtta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
25361952 |
tttggtatatataacttgtta |
25361932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 25357367 - 25357285
Alignment:
| Q |
138 |
acctaaaaagagggtaagtttatt--tgtattatgctaaattaattgttcttcattgttattgtgtttggtatatataacttg |
218 |
Q |
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|||||| |||||||||| |||||| | |||| |||||||||||||||||||| ||||| ||||||||| | ||| ||||||| |
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| T |
25357367 |
acctaacaagagggtaattttattgttttattctgctaaattaattgttcttctttgtttttgtgtttgttttatctaacttg |
25357285 |
T |
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