View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18796_low_49 (Length: 249)
Name: NF18796_low_49
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 6551190 - 6550956
Alignment:
| Q |
3 |
ctatgactttatttctgcacaattataacaagaatcttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagttta |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551190 |
ctatgactttatttctgcacaatcataacaagaatcttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagttta |
6551091 |
T |
|
| Q |
103 |
aatttataaaacatggatattgaaattgagatttagatatgttcaaaataacataaatattatgaaacagaaacaagcgaattaaaacaaacgtgcatta |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551090 |
aatttataaaacatggatattgaaattgagatttagatatgttcaaaataacatatatattatgaaacagaaacaagcgaattaaaacaaacgtgcatta |
6550991 |
T |
|
| Q |
203 |
tgctaaaaatatatatataacgaaatgcaatagaa |
237 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6550990 |
tgctaaaaatatatatacaacgaaatgcaatagaa |
6550956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 1497540 - 1497500
Alignment:
| Q |
150 |
ataacataaatattatgaaacagaaacaagcgaattaaaac |
190 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1497540 |
ataacataaatattatgaaattgaaacaagcaaattaaaac |
1497500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University