View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_54 (Length: 242)
Name: NF18796_low_54
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 42629327 - 42629506
Alignment:
| Q |
52 |
ttgtatatattgcattgttatacatgctaagcaataccttttttatttattaaaaatcataataaccaaaggcatgt----acctcttgtgtgaaaaaac |
147 |
Q |
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| T |
42629327 |
ttgtatatattgcattgttatacatgctaagcaataccttttttatttattaaaaatcataataaccaaaggcatgtatgtacctcttgtgtgaaaaaac |
42629426 |
T |
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| Q |
148 |
actaattgttaattctttcaattggtagaaggctttcctcataaactattatttggcagctctcgcctgtttcacctttg |
227 |
Q |
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| T |
42629427 |
actaagtgttaattctttcaattggtagaaggctttcctcataaactattatttggcagctctggcctgtttcacctttg |
42629506 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 45867133 - 45867068
Alignment:
| Q |
140 |
gaaaaaacactaattgttaattctttcaattggtagaaggctttcctcataaactattatttggca |
205 |
Q |
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| T |
45867133 |
gaaaaaagtctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggca |
45867068 |
T |
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