View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_6 (Length: 528)
Name: NF18796_low_6
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_6 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 240779 - 240505
Alignment:
| Q |
1 |
ttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctca |
100 |
Q |
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| T |
240779 |
ttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctca |
240680 |
T |
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| Q |
101 |
gttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaatt |
200 |
Q |
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| T |
240679 |
gttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaatg |
240580 |
T |
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| Q |
201 |
tgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
275 |
Q |
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| T |
240579 |
tgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
240505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 275 - 504
Target Start/End: Complemental strand, 240461 - 240235
Alignment:
| Q |
275 |
aatttgtatacaccgcactcaatgataccacttttttaggttaatttctaaaacatctctataactaattacttggcatgttttgattagatgcaatata |
374 |
Q |
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| T |
240461 |
aatttgtatacaccgcactcaatgataccacttttttgggttaatttctaaaatatctctataactaattacttggcatgttttgattagatgcaatata |
240362 |
T |
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| Q |
375 |
agcaagtaaaaatagtcacataaaatatgccacacacatacnnnnnnncacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
474 |
Q |
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| T |
240361 |
agtaagt-aaaatagtcacat--aatatgccacacacatacaaaaaaacacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
240265 |
T |
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| Q |
475 |
ttcttcatttgatgcaacatgattacatga |
504 |
Q |
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| T |
240264 |
ttctccatttgatgcaacatgattacatga |
240235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 44599484 - 44599522
Alignment:
| Q |
294 |
caatgataccacttttttaggttaatttctaaaacatct |
332 |
Q |
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| T |
44599484 |
caatgataccacttctttaggttaatttctaaaatatct |
44599522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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