View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_low_9 (Length: 493)
Name: NF18796_low_9
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 9895160 - 9895403
Alignment:
| Q |
8 |
tagcaaagggttgttcaaatattattggtctttcttgatgtataaaattttagtaacaagagttttacttgcttaatgattgagatggtcctagtgttgg |
107 |
Q |
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| T |
9895160 |
tagcaaatggttgttcaaatatcattagtctttcttgatgtataaaattttagtaacaagagttttacttgcttaatgattgagatggtcctagtgttgg |
9895259 |
T |
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| Q |
108 |
tgatatcatcaacaaaatattgttttaagtactaatataccattgtcgataaaaagtactaggatgtcaaattgtgaacaataaatattttttataactg |
207 |
Q |
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| T |
9895260 |
tgatatcatcaacaaaatattgttttaagtactaatataccattgtcgataaaaagtactaggatgtcaaattgtgaacaataaatattttttataactg |
9895359 |
T |
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| Q |
208 |
atttattattacggttaataaaagaggtaaccattttttaacat |
251 |
Q |
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| T |
9895360 |
atttattattacggttaataaaagaggtaaccattttttaacat |
9895403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 299 - 478
Target Start/End: Original strand, 9895449 - 9895628
Alignment:
| Q |
299 |
gaatactacatagccattgaagagcacatgccataaaaagaatcaattgaacgacattaaacagcgcacagaaaaattgaaatgaaacataaatgtgctt |
398 |
Q |
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| T |
9895449 |
gaatactacatagccattgaagagcacatgccataaaaagaatcaattgaacgacattaaacagcgcacagaaaaattaaaatgaaacataaatgtgctt |
9895548 |
T |
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| Q |
399 |
caccggattcgaaggagaaaacaatagaaaaatgttagtgccaaatgtgattcaaatcacacacccatgattagacttta |
478 |
Q |
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| T |
9895549 |
cacgggattcgaaggggaaaacaatagaaaaatgttagtgccaaatgtgattcaaatcacacacccatgattagacttta |
9895628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 17112102 - 17112202
Alignment:
| Q |
150 |
ttgtcgataaaaagtactaggatgtcaaattgtgaacaataaat-attttttataactgatttattattacggttaataaaagaggtaaccattttttaa |
248 |
Q |
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| T |
17112102 |
ttgtcaataaaaagtaccaggatgccaaattgtgagtagtaattaattatttataactactttgttaatacagttaataaaaga--taaccattttttaa |
17112199 |
T |
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| Q |
249 |
cat |
251 |
Q |
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||| |
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| T |
17112200 |
cat |
17112202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 47174053 - 47174154
Alignment:
| Q |
143 |
tataccattgtcgataaaaagtactaggatgtcaaattgtgaacaataaatattttttataactgatttattattacggttaataaaagaggtaaccatt |
242 |
Q |
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| T |
47174053 |
tataccattgtcaataaaaagtaccaggatgccaatttgtgaatagtaa----tttgtataactaatttgttaataccattaataaaa-agataaccatt |
47174147 |
T |
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| Q |
243 |
ttttaac |
249 |
Q |
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||||||| |
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| T |
47174148 |
ttttaac |
47174154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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