View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_high_12 (Length: 258)
Name: NF18797_high_12
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 39241840 - 39241611
Alignment:
| Q |
17 |
accttgcatatcttcaaaccatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagta |
116 |
Q |
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| T |
39241840 |
accttgcatatcttcaaaccatctcccaagtccacatcaacctgaaaattgatttgagaggaaagccgatgaattgcatcatgggttgcaactcgaagta |
39241741 |
T |
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| Q |
117 |
atgccatcgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39241740 |
atgccatcgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccacc |
39241641 |
T |
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| Q |
217 |
gatggtacttcctgccacagcttttatctc |
246 |
Q |
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| T |
39241640 |
gatggtacttcctgccacagcttttatctc |
39241611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 808192 - 807964
Alignment:
| Q |
17 |
accttgcatatcttcaaaccatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagta |
116 |
Q |
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| T |
808192 |
accttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgatgaattgcatcctgggttgcaactcgaagca |
808093 |
T |
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| Q |
117 |
atgccatcgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccacc |
216 |
Q |
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| T |
808092 |
atgccattgacttaatttcttcaaccccgtgacgcttgaatatattttcagaatctggtaagagatggcgcatcatattctgaagcaaatcttctccacc |
807993 |
T |
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| Q |
217 |
gatggtacttcctgccacagcttttatct |
245 |
Q |
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| T |
807992 |
gatggtacttcctgccaaggcttttatct |
807964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 47842917 - 47842826
Alignment:
| Q |
149 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttt |
240 |
Q |
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| T |
47842917 |
ttcttgaatatattttcagaatctggtaagagataacgtatcatattcacaagcaagtcttctccaccactagaacttcctgccaaagcttt |
47842826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 42927003 - 42927097
Alignment:
| Q |
149 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
243 |
Q |
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| T |
42927003 |
ttcttgaatatatttttagaatcaggtaagagatgacaaatcatattttcaagcaaatcttctctaccaataggacttcctgtcagggcttttat |
42927097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 44728001 - 44728094
Alignment:
| Q |
150 |
tcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
243 |
Q |
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| T |
44728001 |
tcttgaatatattttcgtaatcgggaaagagatgacacatcatatttccaagcaaatcttctccaccaatagcacttcctgccaacgcttttat |
44728094 |
T |
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