View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_high_3 (Length: 433)
Name: NF18797_high_3
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 10582095 - 10581941
Alignment:
| Q |
155 |
gttctaagataaatattgatgaatattcagaatttattaagaagactaga-tgaagaatgcatattttagtagatcaagtccttcgattgaagaatacaa |
253 |
Q |
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| T |
10582095 |
gttctaagataaatattgatgaatattcacagtgcttgaag-agac-agagcgaagaatacatattttagtagatcaagtcctttgagtgaagaatgcaa |
10581998 |
T |
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| Q |
254 |
aatctctctgcaaggagaggtctagatgtagcaacaagttgttttgagttagtataa |
310 |
Q |
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| T |
10581997 |
aatctctctgcaaggagaggtctagatgtagcaaaaatttgttttgagttagtataa |
10581941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 10582550 - 10582430
Alignment:
| Q |
6 |
aacaaaaacgtgcatctcgaacgaagcatatgcctgatcaa----------------catgttctgaaaattatgcatctgaagacttaagttacaatga |
89 |
Q |
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| T |
10582550 |
aacaaaaacgtgtatctcgaacgaagcatatgcctgatcaacaagtggagtgtgaagcatgttctgaaaattttgcttctgaatac-taagttacaatga |
10582452 |
T |
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| Q |
90 |
aatggttatgttgaacatccat |
111 |
Q |
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| T |
10582451 |
gatggttatgttgaacatccat |
10582430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 10581869 - 10581822
Alignment:
| Q |
383 |
ctttaatcaaacatttttagggaatgagaaatctttgataaagctcat |
430 |
Q |
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| T |
10581869 |
ctttaaacagacatttttagggaatgagaaatctttgataaagctcat |
10581822 |
T |
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