View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_high_4 (Length: 385)
Name: NF18797_high_4
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 14035862 - 14036189
Alignment:
| Q |
20 |
ttggtctattacaatgcatagattgttttcatccacatatgtgttctccaacttatcagcattatgtgttgtgtgttgttccttaagggagcgaatagta |
119 |
Q |
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| T |
14035862 |
ttggtctattacaatgcatagactgttttcatccacatatgtgttctctaacttatcagcattatgtg-------ttgttccttaagggagcgaatggta |
14035954 |
T |
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| Q |
120 |
aagaaaattgaatttcaagcaaaggcaaatcttacgagaaaattgaaggttttcgactcataaaaggaaattctacatcataatgcaaattatagttgga |
219 |
Q |
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| T |
14035955 |
aagaaaattgaatttcaagcaaaggcaaatcttacgagaaaattgaaggttttcgactcataaaaggaaattctacatcataatgcaaattatagttgga |
14036054 |
T |
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| Q |
220 |
tatataattgaatgttaaatagtaatatggaacaatataaaaagaaaaagacgataaaaatcctataatcaccgctattttgaatataactaacgtgaaa |
319 |
Q |
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| T |
14036055 |
tatataattgaatgttaaatagtaatatggaacaata-aaaaagaaaaagacgataaaaatcctataatcaccggtattttgaatataactaacgtgaaa |
14036153 |
T |
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| Q |
320 |
tgaaacaaaaacataggatattactcaatttaatgt |
355 |
Q |
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| T |
14036154 |
tgaatcaaaaacataggatattactcaatttaatgt |
14036189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 14126038 - 14126127
Alignment:
| Q |
117 |
gtaaagaaaattgaatttcaagcaaaggcaaatcttacgagaaaattgaaggttttcgactcataaaaggaaattctacatcataatgcaa |
207 |
Q |
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| T |
14126038 |
gtaaagaaaattgattttcaagcaaaggcaaaacttaggagagaa-agaaggttttcaattcataaaaagaaattctacatcattatgcaa |
14126127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 14031435 - 14031556
Alignment:
| Q |
164 |
gaaggttttcgactcataaaaggaaattctacatcataatgcaaattatagttggatatataattgaatgttaaatagtaatatggaacaatataaaaag |
263 |
Q |
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| T |
14031435 |
gaaggttttcaattcattaaaagaaattctacatcattatgcaaatt---gatatata-ataattgaatgataaatagtaatgtgaaacaata-aaaagg |
14031529 |
T |
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| Q |
264 |
aaaaagacgataaaaatcctataatca |
290 |
Q |
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| T |
14031530 |
aaaaagaatataaaaatcctataatca |
14031556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 14031264 - 14031311
Alignment:
| Q |
20 |
ttggtctattacaatgcatagattgttttcatccacatatgtgttctc |
67 |
Q |
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| T |
14031264 |
ttggtctattactgtgcaaagactgttttcatccacatatgtgttctc |
14031311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 14125875 - 14125919
Alignment:
| Q |
20 |
ttggtctattacaatgcatagattgttttcatccacatatgtgtt |
64 |
Q |
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|||||||||||| ||||| ||| |||||| ||||||||||||||| |
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| T |
14125875 |
ttggtctattactatgcaaagactgttttgatccacatatgtgtt |
14125919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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