View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_1 (Length: 676)
Name: NF18797_low_1
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Original strand, 15630626 - 15631160
Alignment:
| Q |
18 |
agaagatacagcaaagttaaatgcgactaataccatgtgaaaggttaaccttgaactctattgatgaat----atagaaaagcttgaatatacaagaagc |
113 |
Q |
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| T |
15630626 |
agaagatacagctaagttaaatgcgactaataccatgtgaaaggttaaccttgaactctattgatgaatgaatatataaaagcttgaatatacaagaagc |
15630725 |
T |
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| Q |
114 |
taatgaactgaaaaattgtattcacaaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactagaattagttattaatccctac |
213 |
Q |
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| T |
15630726 |
taatgaactgaaaaattgtatttacaaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactagaattagttattaatccctac |
15630825 |
T |
|
| Q |
214 |
taacttagaaaattgtctaacaaacgcagtttgttagctagtcaactagtcaatgacttgcgatacaagtaaccatctaagcttttttaattcctcaatc |
313 |
Q |
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| T |
15630826 |
taacttagaaaattgtctaacaaacgcagtttgttagctagtcaactagtcagtgacttgcgatacaagtaaccatctaagcttttttaattccacaatc |
15630925 |
T |
|
| Q |
314 |
aacacagatactctactctatttcatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcaaagtaaag |
413 |
Q |
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| T |
15630926 |
aacacacatactctactctactttatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcagagtaaag |
15631025 |
T |
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| Q |
414 |
tatcgctcattttggtgaatgccatagattgcacacgtaactagtttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggactttt |
513 |
Q |
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| T |
15631026 |
tatcgctcattttggtgaatgccatagattgcacacgtaactaatttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggactttt |
15631125 |
T |
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| Q |
514 |
cccacccttgatcacgac-ttcgcatctccctcat |
547 |
Q |
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| T |
15631126 |
cccacccttgatcacgactttggcatctccctcat |
15631160 |
T |
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