View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_10 (Length: 283)
Name: NF18797_low_10
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 1370818 - 1370566
Alignment:
| Q |
16 |
atggagttgagaggatattagttgttgttgaattttgtaggtttgagtattaatagtaggtggtttagcaatgaggttaaatgtattagttagtgattaa |
115 |
Q |
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| T |
1370818 |
atggagttgagaggatattagttgttgttgaattttgtaggtttgagtattaatagtaggtggtttagcaatgaggttaaatgtattagttagtgattaa |
1370719 |
T |
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| Q |
116 |
aggaagtagatggtggtagttacatggttgaattttgtttatttttcatcatcctttctttaatgcttatagcataatttagcataaaagctaaagcctt |
215 |
Q |
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| T |
1370718 |
aggaagtagatggtggtagttacatggttgaattttgtttatttttcatcatcctttctttaatgcttatagcataatttagcataaaagctaaagcctt |
1370619 |
T |
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| Q |
216 |
ttaggtacaaatgttaaattgagcaatacaataataaatgaaacaaggatatg |
268 |
Q |
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| T |
1370618 |
ttaggtacaaatgttaaattgagcaatacaataataaatgaaacaaagatatg |
1370566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 2502812 - 2502874
Alignment:
| Q |
79 |
tttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatg |
141 |
Q |
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| T |
2502812 |
tttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatg |
2502874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 7323759 - 7323697
Alignment:
| Q |
79 |
tttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatg |
141 |
Q |
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| T |
7323759 |
tttagcaatgagatagaaggtgtttgttagggattaaaggaagtagatggtggtagttacatg |
7323697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 757107 - 757033
Alignment:
| Q |
65 |
ttaatagtaggtggtttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttaca |
139 |
Q |
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| T |
757107 |
ttaataatagatgttttcgcaatgaggtggatggtatttgttagtgattagaggaagtagatggtgctagttaca |
757033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 9561278 - 9561246
Alignment:
| Q |
97 |
tgtattagttagtgattaaaggaagtagatggt |
129 |
Q |
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| T |
9561278 |
tgtatttgttagtgattaaaggaagtagatggt |
9561246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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