View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_11 (Length: 265)
Name: NF18797_low_11
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27440744 - 27440998
Alignment:
| Q |
1 |
acaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatgg |
100 |
Q |
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| T |
27440744 |
acaaattcatatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatgg |
27440843 |
T |
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| Q |
101 |
tcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagccc |
200 |
Q |
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| T |
27440844 |
tcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagccc |
27440943 |
T |
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| Q |
201 |
aggtgcagttgattattttatttcaaattatttttaatgataactatgacctatg |
255 |
Q |
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| T |
27440944 |
aggtgcagttgattattttatttcaaattatttttaatgataactatgacctatg |
27440998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 27443574 - 27443801
Alignment:
| Q |
13 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactagga |
112 |
Q |
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| T |
27443574 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaactcagagaattctgcaagcagaaaggaattcatgtgagtgcatggtcaccactagga |
27443673 |
T |
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| Q |
113 |
ggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagttga |
212 |
Q |
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| T |
27443674 |
ggatacaaactaagttttggttcgcctgcagtgatggagaattcaattctgcgagaaattgctgaggctagaaagaaaagtgtagcccaggtgcagctca |
27443773 |
T |
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| Q |
213 |
ttattttatttcaaattatttttaatga |
240 |
Q |
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| T |
27443774 |
ttattttatttcaaactattttcaatga |
27443801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27429295 - 27429518
Alignment:
| Q |
1 |
acaaatttttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatgg |
100 |
Q |
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|||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429295 |
acaaatttttgtttggatttaggtggagatgaacccatcatggcaacaggggaaactaagagaattctgcaagcagaaaggaatccatgtgagtgcatgg |
27429394 |
T |
|
| Q |
101 |
tcaccactaggaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagccc |
200 |
Q |
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| T |
27429395 |
tcaccactaggaggatacaaactaagttggggttcgcctacagtgatggagaatccaattctgcacgaaattgcagaggctagaaagaagagtgtagccc |
27429494 |
T |
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| Q |
201 |
aggtgcagttgattattttatttc |
224 |
Q |
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|||||||| | ||||||||||||| |
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| T |
27429495 |
aggtgcagctcattattttatttc |
27429518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 26911221 - 26911095
Alignment:
| Q |
9 |
ttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccact |
108 |
Q |
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|||||||||||||||| |||||||| |||| |||||||| | ||||| || |||||||||| | |||||||||| |||||| |||||||||||||| | |
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| T |
26911221 |
ttatttggatttaggtagaaatgaatccatcttggcatcaagaaaaactcagggaattctgcatgaagaaaggaattcatgtgtgtgcatggtcaccatt |
26911122 |
T |
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| Q |
109 |
aggaggctacaaactaagttggggttc |
135 |
Q |
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|||| |||||| || ||||||||| |
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| T |
26911121 |
gggagcatacaaagtattttggggttc |
26911095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 26911093 - 26911054
Alignment:
| Q |
169 |
aattgctgaggctagaaagaagagtgtagcccaggtgcag |
208 |
Q |
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| T |
26911093 |
aattgctgaggctagaaataagagtgtagctcaggtgcag |
26911054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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