View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_15 (Length: 242)
Name: NF18797_low_15
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 5944029 - 5944253
Alignment:
| Q |
10 |
catcatcacaactcaaaactgatggacaaattcacaaatcaaaagatagattcacaactcagcatgcaaaagccaagaagagcatgaaatgttaaaaatc |
109 |
Q |
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| T |
5944029 |
catcatcacaactcaaaactgatggacaaattcacaaatcaaaagatagattcacaactcagcatgcaaaagccaagaagagcatgaaatgttaaaaatc |
5944128 |
T |
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| Q |
110 |
aaaagaaacattgacaaaacacagatccaaaattactagagagtggaagatggttagactattttccagttggaggcaaatgatgggccaccatcaaaat |
209 |
Q |
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| T |
5944129 |
aaaagaaacattgacaaaacacagattcaaaattactagagagtggaagatggttagactattttccagttggaggcaaatgatgggccaccatcaagat |
5944228 |
T |
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| Q |
210 |
tatcacatgtctatactgatgatgt |
234 |
Q |
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| T |
5944229 |
tattacatgtcaatactgatgatgt |
5944253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 18624778 - 18624729
Alignment:
| Q |
24 |
aaaactgatggacaaattcacaaatcaaaagatagattcacaactcagca |
73 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||| |
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| T |
18624778 |
aaaactgatgaacaaactcacaaatcacaagataaattcacaactcagca |
18624729 |
T |
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