View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_16 (Length: 237)
Name: NF18797_low_16
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5828258 - 5828494
Alignment:
| Q |
1 |
ttccaaatcatatccatcttcaacacttctcattacaaataaacacaaaaacaaagaaagagaaataatctattgttccttctttgctaaataatatctc |
100 |
Q |
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| T |
5828258 |
ttccaaatcatatccatcttcaacacttcccattacaaataaacacaaaaacaaagaaagagaaataatctattgttccttctttgctaaataatatctc |
5828357 |
T |
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| Q |
101 |
atcatatttgccaaaactatactttttacatagaaccatgtctttctcaaccaaattgcctttggttttgttactttcttcttttctcatccatacatct |
200 |
Q |
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| T |
5828358 |
atcatatttgccaaaactatactttttacatagaaccatgtctttctcaaccaaattgcctttggttttgttactttcttcttttctcatccatacatct |
5828457 |
T |
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| Q |
201 |
tttggtatgtatattatatcctacaattttcaatttc |
237 |
Q |
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| T |
5828458 |
tttggtatgtatattatatcctacaattttcaatttc |
5828494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 5823529 - 5823360
Alignment:
| Q |
71 |
tattgttccttctttgctaaataatatctcatcatattt-----gccaaaactatactttttacatagaaccatgtctttctcaaccaaattgcctttgg |
165 |
Q |
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| T |
5823529 |
tattattccttctttcctaactaatatttcatcatatttaatttgccaaat-tatactttt-acgtagaaccatgtctttctcaacaaaattgcctttga |
5823432 |
T |
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| Q |
166 |
ttttgttactttcttcttttctcatccatacatcttttggtatgtatattatatcctacaattttcaatttc |
237 |
Q |
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| T |
5823431 |
ttttgttactctcttcttttctcatccatacatcttttggtatgcatactatatcctacaattttcaatttc |
5823360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 5833335 - 5833253
Alignment:
| Q |
134 |
aaccatgtctttctcaaccaaattgcctttggttttgttactttcttcttttctcatccatacatcttttggtatgtatatta |
216 |
Q |
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| T |
5833335 |
aaccatgtctttctcaaccaaactatcattggttttattactttcttcttttctcatccatgcttctttaggtatgtatatta |
5833253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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