View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_3 (Length: 554)
Name: NF18797_low_3
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 47470065 - 47469744
Alignment:
| Q |
30 |
tgggagatactattcatattcctcgagtgaagcttggaagccaaggcctagaagtaagtaacttttgtccttccttgaattttcacacttccttgttcct |
129 |
Q |
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| T |
47470065 |
tgggagatactattcatattcctcgagtgaagcttggaagccaaggcctagaagtaagtaacttttgtccttccttgaattttcacacttccttgttcct |
47469966 |
T |
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| Q |
130 |
gagaatcattgataatatttattgttgctttcaggtttctaagcttggatatggatgtatgggcctcactggagtatacaacgctgctgttccagaagat |
229 |
Q |
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| T |
47469965 |
gagaatcattgataatatttattgttgctttcaggtttctaagcttggatatggatgtatgggcctcactggagtatacaacgctgctgttccagaagat |
47469866 |
T |
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| Q |
230 |
gttgccatatctttgatcaaacatgctttctccaaaggaatcactttctttgacactgctgatttttatgctgcacataccaatgaagtttttgtcggaa |
329 |
Q |
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| T |
47469865 |
gttgccatatctttgatcaaacatgctttctccaaaggaatcactttctttgacactgctgatttttatgctgcacataccaatgaagtttttgtcggaa |
47469766 |
T |
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| Q |
330 |
aggtactactttcattcacata |
351 |
Q |
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| T |
47469765 |
aggtactactttcattcacata |
47469744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 47469719 - 47469559
Alignment:
| Q |
377 |
gcataacaaaaatgatgtaacataaacattttaacaattctcaggcactaaaggacataccacgagatcaaattcagattgctacaaagtttgggattgt |
476 |
Q |
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| T |
47469719 |
gcataacaaaaatgatgtaacataaacattttaacaattctcaggcacttaaggacataccacgagatcaaattcagattgctacaaagtttgggattgt |
47469620 |
T |
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| Q |
477 |
caaaatggaatctggtaacgttgtagtaaatggtagtcctgaatatgttcgatcatgttgt |
537 |
Q |
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| T |
47469619 |
caaaatggaatctggtaacgttgtagtaaatggtagtcctgaatatgttcgatcatgttgt |
47469559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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