View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_5 (Length: 411)
Name: NF18797_low_5
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 46 - 411
Target Start/End: Original strand, 21371034 - 21371398
Alignment:
| Q |
46 |
tgttaattaatcaagattaattagtttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaataa |
145 |
Q |
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| T |
21371034 |
tgttaattaatcaagattaattactttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaatac |
21371133 |
T |
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| Q |
146 |
aacacactccttcttcattcttcacaacaatattcatcacatcctaaaccaattacttttctatttacacccctctcattactaaaaacagctataacaa |
245 |
Q |
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| T |
21371134 |
aacacactccttcttcattcttcacaataatattcatcacattc-aaaccaattacctttctatttacacccctctcattactaaaaacagctatatcaa |
21371232 |
T |
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| Q |
246 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
345 |
Q |
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| T |
21371233 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
21371332 |
T |
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| Q |
346 |
taccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttc |
411 |
Q |
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| T |
21371333 |
taccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttc |
21371398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 21386523 - 21386159
Alignment:
| Q |
46 |
tgttaattaatcaagattaattagtttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaataa |
145 |
Q |
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| T |
21386523 |
tgttaattaatcaagattaattactttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaatac |
21386424 |
T |
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| Q |
146 |
aacacactccttcttcattcttcacaacaatattcatcacatcctaaaccaattacttttctatttacacccctctcattactaaaaacagctataacaa |
245 |
Q |
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| T |
21386423 |
aacacactccttcttcattcttcacaataatattcatcacattc-aaaccaattacctttctatttacacccctctcattactaaaaacagctatatcaa |
21386325 |
T |
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| Q |
246 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
345 |
Q |
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| T |
21386324 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
21386225 |
T |
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| Q |
346 |
taccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttc |
411 |
Q |
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| T |
21386224 |
taccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttc |
21386159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 21370960 - 21371002
Alignment:
| Q |
12 |
atgaacctttgggatataccatgagttatttccctgttaatta |
54 |
Q |
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| T |
21370960 |
atgaacctttgggatataccatgagttctttcactgttcatta |
21371002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 21386597 - 21386555
Alignment:
| Q |
12 |
atgaacctttgggatataccatgagttatttccctgttaatta |
54 |
Q |
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| T |
21386597 |
atgaacctttgggatataccatgagttctttcactgtttatta |
21386555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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