View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18797_low_7 (Length: 384)

Name: NF18797_low_7
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18797_low_7
NF18797_low_7
[»] chr5 (2 HSPs)
chr5 (1-384)||(10358001-10358384)
chr5 (115-147)||(645344-645376)
[»] chr7 (4 HSPs)
chr7 (115-156)||(10893875-10893916)
chr7 (115-146)||(30737168-30737199)
chr7 (115-152)||(18750888-18750925)
chr7 (122-154)||(37610057-37610089)
[»] chr3 (1 HSPs)
chr3 (115-152)||(30367629-30367666)
[»] chr8 (2 HSPs)
chr8 (115-154)||(32691755-32691794)
chr8 (116-154)||(8917544-8917582)
[»] chr6 (1 HSPs)
chr6 (121-166)||(10031588-10031633)
[»] chr4 (3 HSPs)
chr4 (115-160)||(683064-683109)
chr4 (115-155)||(41989576-41989616)
chr4 (123-159)||(45267889-45267925)


Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 10358001 - 10358384
Alignment:
Q  1 ctatcattacatcacagaatgcatagtaaatatctcacagcaatgtagcaacacattttctttcttttaaataaactttagcaatgacctatgaagcacc 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358001 ctatcattacatcacagaatgcatactaaatatctcacagcaatgtagcaacacattttctttcttttaaataaactttagcaatgacctatgaagcacc 10358100  T
Q  101 gacacaaccagtaaaatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaatgccggacacacctccaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10358101 gacacaaccagtaaaatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaatgccggacacaccttcaatc 10358200  T
Q  201 agaagtgtcaagtgttatcgaggcaacgactacattaactacattgtttcttaatgattctatactttccagacgcaacatcacaatgaaacagataaac 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10358201 agaagtgtcaagtgttattgaggcaacgactacattaactacattgtttcttaatgattctatactttccagacgcaacatcacaatgaaacagataagc 10358300  T
Q  301 tcaatacaaattacaattcatttttaatttcaaaaatcacacgaaacaggacgcagcaacaatatcaaatcacaacattcaaaa 384  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  10358301 tcaatacaaattacaattcatttttaatttcaaaaatcatacgaaacaggacgcaacaacaatatcaaatcacaagattcaaaa 10358384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 645344 - 645376
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatca 147  Q
    |||||||||||||||||||| ||||||||||||    
T  645344 aatttaagaaaatgacataattgaatgtaatca 645376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 10893916 - 10893875
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgtgttg 156  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  10893916 aatttaagaaaatgacataattgaatgtaatcacatgtgttg 10893875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 30737199 - 30737168
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatc 146  Q
    ||||||||||||||||||||||||||||||||    
T  30737199 aatttaagaaaatgacataactgaatgtaatc 30737168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 18750888 - 18750925
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgt 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  18750888 aatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 37610089 - 37610057
Alignment:
Q  122 gaaaatgacataactgaatgtaatcaaatgtgt 154  Q
    |||||||||||||||||||||||||| ||||||    
T  37610089 gaaaatgacataactgaatgtaatcacatgtgt 37610057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 30367666 - 30367629
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgt 152  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30367666 aatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 32691755 - 32691794
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgtgt 154  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  32691755 aatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 8917582 - 8917544
Alignment:
Q  116 atttaagaaaatgacataactgaatgtaatcaaatgtgt 154  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtgt 8917544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 10031588 - 10031633
Alignment:
Q  121 agaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtc 166  Q
    |||||||||||||| | |||||||||| | ||||||||||||||||    
T  10031588 agaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 10031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 683064 - 683109
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtc 160  Q
    ||||| |||||||||||||| |||||||||||| |||||| |||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgtcgtgtc 683109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 41989576 - 41989616
Alignment:
Q  115 aatttaagaaaatgacataactgaatgtaatcaaatgtgtt 155  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  41989576 aatttaagaaaatgacataattgaatgtaattaactgtgtt 41989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 45267889 - 45267925
Alignment:
Q  123 aaaatgacataactgaatgtaatcaaatgtgttgtgt 159  Q
    |||||||||||| |||||||||||| |||||||||||    
T  45267889 aaaatgacataattgaatgtaatcatatgtgttgtgt 45267925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University