View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_8 (Length: 350)
Name: NF18797_low_8
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 8511846 - 8511529
Alignment:
| Q |
12 |
gtgagatgaaaaccaaaatcaattaggtaggaaaaataggaaaccaaaatcaatgctcctataatatgataacaatgactttcaagtcaatgtacatcta |
111 |
Q |
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| T |
8511846 |
gtgagatgaaaaataaaaccaatcaggtagtaaaaataggaaatcaa--tcaatgctcctataatacgataacaatgactttcaagtcaatgtacatgta |
8511749 |
T |
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| Q |
112 |
caaccacaactttttagccaatgtaatgttgaaagattaaaaaagtcattataatgtaatggatgagcaaaaaatgaatgttgcatattagaatgaccca |
211 |
Q |
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| T |
8511748 |
cgaccacaactttttagccaatgtaatgttgaaagattaaagaaatcattataatgtaatggatgagcaaaaaatgaatgaagcatattagaatgaccca |
8511649 |
T |
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| Q |
212 |
tcgaaatgcatgagccaactttaagtttgatatctttttcgaatcggcttttaaagnnnnnnnnattcgaataaattttttatgacacattctctttttc |
311 |
Q |
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| T |
8511648 |
tcgaaatgcatgagtcaactttaagtttgatctctttttcgaattggccttttaagtattttttattcgaataaatttttaatgacacattctctttttc |
8511549 |
T |
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| Q |
312 |
gatctagaagagtagtatat |
331 |
Q |
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| T |
8511548 |
aatttagaagagtagtatat |
8511529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 8521389 - 8521241
Alignment:
| Q |
59 |
aatcaatgctcctataatatgataacaatgactttcaagtcaatgtacatctacaaccacaactttttagccaatgtaatgttgaaagatt-aaaaaagt |
157 |
Q |
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| T |
8521389 |
aatcgatgctcctataatacgataacaatgactttaaagtcaatctacatgtacaaccacagctttttagccaatgtaacgttgaaagattcaaaaaagt |
8521290 |
T |
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| Q |
158 |
cattataatgtaatggatgagcaaaaaatgaatgttgcatattagaatga |
207 |
Q |
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| T |
8521289 |
cggtat-tcgtaatggatgaaccaaaaatgaatgatgcttgttagaatga |
8521241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 12251123 - 12251036
Alignment:
| Q |
59 |
aatcaatgctcctataatatgataacaatgactttcaagtcaatgtacatctacaaccacaactttttagccaatgtaatgttgaaaga |
147 |
Q |
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| T |
12251123 |
aatcaatgctc-tataatacgataacaatgattttaaagtcattgtacatgtacaaccacaactttttagccaatgtcatgttcaaaga |
12251036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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