View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18797_low_9 (Length: 344)
Name: NF18797_low_9
Description: NF18797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18797_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 27440345 - 27440661
Alignment:
| Q |
18 |
gccataactttaaaggtgaggatacaactccttttgacataaaaggaacatgggaagctatggaagattgttatagattgggcatagcaaagtctattgg |
117 |
Q |
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| T |
27440345 |
gccataactttaaaggtgaggatacaattccttttgacataaaaggaacatgggaatctatggaagattgttatagattgggcatagcaaagtctattgg |
27440444 |
T |
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| Q |
118 |
tgtcagcaactttggtatcaaaaagctctccatgctcttagaaaatgccgaaattgctcctgcagttaaccaggtatatgaatttagtactacttgattt |
217 |
Q |
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| T |
27440445 |
tgtcagcaactttggtatcaaaaagctctccatgctcttagaaaatgccgaaattgctcctgcagttaaccaggtatatgaatttagtactacttgattt |
27440544 |
T |
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| Q |
218 |
gattcattatgcctcagttgcttcaaaatggaagagcatcatacacgtatcgtcagatatttcccaaaacttatagtatccaataatttattgtaattct |
317 |
Q |
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| T |
27440545 |
gattcattatgcctcagttgcttcaaaatggaagagcatcatacacgtatcgtcagatatttcccaaaacttatagtatccaataatttattgtaattct |
27440644 |
T |
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| Q |
318 |
ttcgcaaaatatttcct |
334 |
Q |
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| T |
27440645 |
ttcgcaaaatatttcct |
27440661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 27428845 - 27429020
Alignment:
| Q |
50 |
tttgacataaaaggaacatgggaagctatggaagattgttatagattgggcatagcaaagtctattggtgtcagcaactttggtatcaaaaagctctcca |
149 |
Q |
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| T |
27428845 |
tttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaaagctctcca |
27428944 |
T |
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| Q |
150 |
tgctcttagaaaatgccgaaattgctcctgcagttaaccaggtatatgaatttagtactacttgatttgattcatt |
225 |
Q |
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| T |
27428945 |
tactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttgattcatt |
27429020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 27443269 - 27443442
Alignment:
| Q |
21 |
ataactttaaaggtgaggatacaactccttttgacataaaaggaacatgggaagctatggaagattgttatagattgggcatagcaaagtctattggtgt |
120 |
Q |
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| T |
27443269 |
ataacattaaaagtgaggatataattccttttgatataaaaggaacatgggaagctatggaatattgttatagattgggcttagcaaagtctattggtgt |
27443368 |
T |
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| Q |
121 |
cagcaactttggtatcaaaaagctctccatgctcttagaaaatgccgaaattgctcctgcagttaaccaggtat |
194 |
Q |
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| T |
27443369 |
tagcaactttggtatcaaaaagctctccatgctcttcgaaagtgccaaaatctatcctgcagttaatcaggtat |
27443442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 27418325 - 27418373
Alignment:
| Q |
50 |
tttgacataaaaggaacatgggaagctatggaagattgttatagattgg |
98 |
Q |
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| T |
27418325 |
tttgatataaaaggaacatgggaagctacggaagattgttatagattgg |
27418373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 26933256 - 26933160
Alignment:
| Q |
50 |
tttgacataaaaggaacatgggaagctatggaagattgttatagattgggcatagcaaagtctattggtgtcagcaactttggtatcaaaaagctct |
146 |
Q |
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| T |
26933256 |
tttgacataaaacgaacatggaaagttatggaagattgatttagattaggcttagccaagtctattggtgttagcaactttggcatcaaaaagctct |
26933160 |
T |
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