View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18798_high_3 (Length: 321)
Name: NF18798_high_3
Description: NF18798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18798_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 93 - 306
Target Start/End: Original strand, 31026205 - 31026418
Alignment:
| Q |
93 |
aaccaatgaatgaagcatagaaaattctaaattattcaaatttgtccagtatgagtgaagggaaccaaacaatttagaattttgtcaagtcctaaactgc |
192 |
Q |
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| T |
31026205 |
aaccaatgaatgaagcatagaaaattctaaattattcaaatttgtctagtatgagtgaagggaaccaaacaatttagaattttgtcaagtcctaaactgc |
31026304 |
T |
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| Q |
193 |
caattataaacttacaatttagatgatggtttagttagttttaacactgaaacctcacatatgatattttaaatatgcgaaagtaatataagatgtgaga |
292 |
Q |
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| T |
31026305 |
caattataaacttacaatttagatgatgctttaattagttttaacactaaaacctcacatatgatattttaaatatgcgaaagtaatataagatgtgaga |
31026404 |
T |
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| Q |
293 |
tttttgataatttt |
306 |
Q |
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|||||||||||||| |
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| T |
31026405 |
tttttgataatttt |
31026418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 31026085 - 31026172
Alignment:
| Q |
8 |
atcatcatccatagaagtggtggtttctccaatcccactaggtctttgatctttactgaatgcaagtcctaaattgcttgttcagaac |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
31026085 |
atcatcatccatagaagtggtggtttctccaatcccactaggtctttgatctttactgaatgcaagtccgaaactgcttgttcagaac |
31026172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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