View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18798_low_3 (Length: 429)
Name: NF18798_low_3
Description: NF18798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18798_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 48139777 - 48139496
Alignment:
| Q |
12 |
atcatcaattgagaagaaatagggcaaagaaaatgagaaggaggggcaaaatggtcaaatttatgagagaaagattttgttgttccattcttactactaa |
111 |
Q |
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| T |
48139777 |
atcatcaattgagaagaaatagggcaaagaaaatgagaaggaggggcaaaatggtcaaatttatgagagaaagattttgttgttccattcttactactaa |
48139678 |
T |
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| Q |
112 |
gagagttgttgttcttgttcttgattttgaaatctttgagagaagaaagagtagcgatagcatcatcggtggtttgcagagaatagtcatcatcagagtc |
211 |
Q |
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| T |
48139677 |
gagagttcttgttcttgttcttgattttgaaatctttgagagaagaaagagtagagatagcatcatcggtggtttgcagagaatagtcatcatcagagtc |
48139578 |
T |
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| Q |
212 |
aacgatagttttaacaagtttccataaccgttctttcaattctttcgattccgccataaccgaataatgctgcattgcttgc |
293 |
Q |
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| T |
48139577 |
aacgatagttttaacaagtttccataaccgttctttcaattctttcgattccgccataaccgaatgctgctgcattgcttgc |
48139496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 48139424 - 48139382
Alignment:
| Q |
368 |
aattctaattaaatcactaacagacaaacaaacaataacacaa |
410 |
Q |
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| T |
48139424 |
aattctaattaaatcactaacagacaaacaaacaataacacaa |
48139382 |
T |
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