View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18798_low_4 (Length: 378)
Name: NF18798_low_4
Description: NF18798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18798_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 48814986 - 48814634
Alignment:
| Q |
10 |
gagactcaaattgctaagactgaatcagatgcaaaaattactttagggcttgccccaggtgaacttgcaattgtcaatccaaacnnnnnnnctatcgttg |
109 |
Q |
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| T |
48814986 |
gagactcaaattgctaagactgaatcagatgcaaaaattactctagggcttgccccaggtgaacttgcaattgtcaatccaaacaaaaaaactatcgttg |
48814887 |
T |
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| Q |
110 |
gaaacgacgttggataccgtttgatcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaattataa |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48814886 |
gaaacgacgtcggataccgtttgatcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaattataa |
48814787 |
T |
|
| Q |
210 |
tgtttgggtcacaccttataatagaactgaaaaatgggccggtggactatatgttgatcatagccgtggagaagacacattagctgtttggaccaaaaag |
309 |
Q |
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| T |
48814786 |
tgtttgggtcacaccttataatagaactgaaaaatgggctggtggactatatgttgatcatagccgtggagaagacacattagctgtttggaccaaaaag |
48814687 |
T |
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| Q |
310 |
tatgannnnnnnnnatttgatttgtacatttgctaataattgatcttggtaagt |
363 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48814686 |
tatga-ttttttttatttgatttgtacatttgctaataattgatcttggtaagt |
48814634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 48835356 - 48835660
Alignment:
| Q |
10 |
gagactcaaattgctaagactgaatcagatgcaaaaattactttagggcttgccccaggtgaacttgcaattgtcaatccaaacnnnnnnnctatcgttg |
109 |
Q |
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|||||||||| || |||||| ||||||||||||||||| || | |||||||||||||||||||||||| |||| ||||||||| || | |||| |
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| T |
48835356 |
gagactcaaactgttaagacagaatcagatgcaaaaataacaattgggcttgccccaggtgaacttgcatttgttaatccaaacaaaaaaactgttgttg |
48835455 |
T |
|
| Q |
110 |
gaaacgacgttggataccgtttgatcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaattataa |
209 |
Q |
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| || || ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48835456 |
gtaatgaagttggataccgtttgattccagcaattccagctcatccacttttaactgaagatgattatccacaaatacgtggtgcatttactaattataa |
48835555 |
T |
|
| Q |
210 |
tgtttgggtcacaccttataatagaactgaaaaatgggccggtggactatatgttgatcatagccgtggagaagacacattagctgtttggaccaaaaag |
309 |
Q |
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| T |
48835556 |
tgtttgggtcgcaccttataatagaactgaaaaatgggctggtggactttatgttgatcatagccgtggagatgacacattagctgtttggaccaaaaag |
48835655 |
T |
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| Q |
310 |
tatga |
314 |
Q |
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||||| |
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| T |
48835656 |
tatga |
48835660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 121 - 311
Target Start/End: Complemental strand, 48788440 - 48788250
Alignment:
| Q |
121 |
ggataccgtttgatcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaattataatgtttgggtca |
220 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||| |
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| T |
48788440 |
ggataccgtttgattccggcaattccagctcatccacttctaaccgaagatgattacccacaaatacgtggtgctttcactaattataatgtttggatca |
48788341 |
T |
|
| Q |
221 |
caccttataatagaactgaaaaatgggccggtggactatatgttgatcatagccgtggagaagacacattagctgtttggaccaaaaagta |
311 |
Q |
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| T |
48788340 |
caccttataatagaactgaaaaatgggctggtggactttatgttgatcatagtcgtggagatgacactttagctgtttggaccaaacagta |
48788250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 106 - 311
Target Start/End: Complemental strand, 15824490 - 15824285
Alignment:
| Q |
106 |
gttggaaacgacgttggataccgtttgatcccagcaattccagctcatccacttctaaccgaagatgattatccacaaatacgtggtgcatttactaatt |
205 |
Q |
| |
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||||||||| || | |||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||||| |||| |
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| T |
15824490 |
gttggaaaccacatcggataccgtttgattccagcaattcctgctcattcacttctaactgaagatgattatccgcaaatacgcggtgcatttaccaatt |
15824391 |
T |
|
| Q |
206 |
ataatgtttgggtcacaccttataatagaactgaaaaatgggccggtggactatatgttgatcatagccgtggagaagacacattagctgtttggaccaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
15824390 |
ataatgtttgggtcacaccttataatagaactgaaaaatgggctggtggactctatgttgatcatagtcgtggagatgacactttagctgtttggaccaa |
15824291 |
T |
|
| Q |
306 |
aaagta |
311 |
Q |
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| |||| |
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| T |
15824290 |
acagta |
15824285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 15824586 - 15824549
Alignment:
| Q |
10 |
gagactcaaattgctaagactgaatcagatgcaaaaat |
47 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
15824586 |
gagactcaaactgctaagactgaatcagatgcaaaaat |
15824549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 48788551 - 48788514
Alignment:
| Q |
10 |
gagactcaaattgctaagactgaatcagatgcaaaaat |
47 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
48788551 |
gagactcaaactgctaagacagaatcagatgcaaaaat |
48788514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 47103766 - 47103663
Alignment:
| Q |
169 |
gatgattatccacaaatacgtggtgcatttactaattataatgtttgggtcacaccttataatagaactgaaaaatgggccggtggactatatgttgatc |
268 |
Q |
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||||||||||||||||| | ||||| || |||||||||||||| ||||||||||| || || | |||||| |||||||| || ||| |||||||||||| |
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| T |
47103766 |
gatgattatccacaaattagaggtgctttcactaattataatgtgtgggtcacaccatacaacaaaactgagaaatgggcaggaggattatatgttgatc |
47103667 |
T |
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| Q |
269 |
atag |
272 |
Q |
| |
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|||| |
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| T |
47103666 |
atag |
47103663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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