View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18798_low_8 (Length: 235)
Name: NF18798_low_8
Description: NF18798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18798_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 2197100 - 2197301
Alignment:
| Q |
16 |
aatatgaccctatagaactcttgctgaacagaactgtagcctacaaaagcccattcaaagccaaatctgactatgtaaaaaagcctataccagaaactgg |
115 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2197100 |
aatatgatcctatagaactcttgctaaacagaattgtagcctacaaaagcccattcaaagccaaatctgattatgtaaaagtgcctataccagaaactgg |
2197199 |
T |
|
| Q |
116 |
tttagaaggtatttggaaaatgcttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2197200 |
tttagaaggtatttggaaaatgcttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaa |
2197299 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
2197300 |
at |
2197301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 2184518 - 2184716
Alignment:
| Q |
19 |
atgaccctatagaactcttgctgaacagaactgtagcctacaaaagcccattcaaagccaaatctgactatgtaaaaaagcctataccagaaactggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| || ||||| ||||||||| | |||||||||||| ||||||| |
|
|
| T |
2184518 |
atgaccctatagaactcttgctgaacagaattgtaacctacaaaagcccattcatagctaagtctgattatgtaaaagaacctataccagaagctggttt |
2184617 |
T |
|
| Q |
119 |
agaaggtatttggaaaatgcttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaaat |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184618 |
agaaggtatttggagaatgcttctaaaagaagacacatcagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaaat |
2184716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 2152904 - 2153102
Alignment:
| Q |
19 |
atgaccctatagaactcttgctgaacagaactgtagcctacaaaagcccattcaaagccaaatctgactatgtaaaaaagcctataccagaaactggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
2152904 |
atgaccctatagaactcttgctgaacagaattgtaaccttcaaaagcccattcaaagcgaaatccgattatgtaaaagagcctataccagaaactggttt |
2153003 |
T |
|
| Q |
119 |
agaaggtatttggaaaatgcttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
2153004 |
agaaggtatttggaaaatgcttctaaaagaagacacattagcactacttataatggaaccttatggtggaagactgaatgaaatttcagaatctgaaat |
2153102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 2176560 - 2176761
Alignment:
| Q |
16 |
aatatgaccctatagaactcttgctgaacagaactgtagcctacaaaagcccattcaaagccaaatctgactatgtaaaaaagcctataccagaaactgg |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||| || |||||||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
2176560 |
aatatgatcctatagaactcttgctgaacagaactacaacctacaaaagctcattcaaggctaaatctgattatgtaaaagagcctataccagaaattgg |
2176659 |
T |
|
| Q |
116 |
tttagaaggtatttggaaaatgcttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaa |
215 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| || |||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
2176660 |
tttacaaggtatttggaaaatgcttctaaaacaagaaacatttgcattacttataatggaaccttatggtggaagactgaatgaaatttcagaatctgaa |
2176759 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
2176760 |
at |
2176761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 35539109 - 35539188
Alignment:
| Q |
138 |
cttctaaaagaagacacattagcattacttataatggagccatatggtggaaaaatgagtgaaatttcagaatctgaaat |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
35539109 |
cttctaaaagaagatccattagcattacttataatggaaccatatggtggaagaatgaatgaaatttcaaaatctgaaat |
35539188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 38146307 - 38146344
Alignment:
| Q |
177 |
ccatatggtggaaaaatgagtgaaatttcagaatctga |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38146307 |
ccatatggtggaaaaatgagtgaattttcagaatctga |
38146344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University