View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_high_1 (Length: 687)
Name: NF18799_high_1
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 343 - 673
Target Start/End: Original strand, 3911343 - 3911673
Alignment:
| Q |
343 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
442 |
Q |
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| T |
3911343 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
3911442 |
T |
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| Q |
443 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
542 |
Q |
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| T |
3911443 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
3911542 |
T |
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| Q |
543 |
ttgaaaatccaactctttcttcatttcacataaaaagctatattatttggagaatacacagaagaatactctttaactcacttcaccttaccctttcaat |
642 |
Q |
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| T |
3911543 |
ttgaaaatccaactctttcttcatttcacataaaaagctatattatttggagaatacacagaagaatactctttaactcacttcaccttaccctttcaat |
3911642 |
T |
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| Q |
643 |
ggttcctactgagtgctacagttgaagaagg |
673 |
Q |
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| T |
3911643 |
ggttcctagtgagtactacagttgaagaagg |
3911673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 3911018 - 3911271
Alignment:
| Q |
18 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
117 |
Q |
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| T |
3911018 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
3911117 |
T |
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| Q |
118 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
217 |
Q |
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| T |
3911118 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
3911217 |
T |
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| Q |
218 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
271 |
Q |
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| T |
3911218 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
3911271 |
T |
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