View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18799_high_13 (Length: 281)

Name: NF18799_high_13
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18799_high_13
NF18799_high_13
[»] chr5 (8 HSPs)
chr5 (95-265)||(35423444-35423614)
chr5 (95-265)||(35376185-35376355)
chr5 (137-265)||(35754635-35754763)
chr5 (137-265)||(35366681-35366809)
chr5 (141-265)||(35370069-35370193)
chr5 (137-229)||(35406413-35406505)
chr5 (153-265)||(35436850-35436962)
chr5 (183-262)||(35385214-35385293)
[»] chr1 (3 HSPs)
chr1 (137-265)||(10415928-10416056)
chr1 (137-262)||(10420818-10420943)
chr1 (166-265)||(10410237-10410336)
[»] chr2 (3 HSPs)
chr2 (137-265)||(30625892-30626020)
chr2 (137-265)||(30662843-30662971)
chr2 (137-265)||(30671523-30671651)
[»] chr7 (1 HSPs)
chr7 (137-265)||(29623369-29623497)
[»] chr8 (1 HSPs)
chr8 (156-265)||(13564470-13564579)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 35423444 - 35423614
Alignment:
Q  95 gttaccttcttcaccatctctaaataacggactcttgaggtatacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggt 194  Q
    |||| |||||||||||||| | |  |||||   |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  35423444 gttatcttcttcaccatctttgataaacgggagcttgagggttacttatggagagctacatgaagcaaccaatggattttcttcatccaatttggtcggt 35423543  T
Q  195 acaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattgttgtaaaggtgtt 265  Q
    ||||||||||| || |||||||||||||||||||| ||| ||| ||||| |||||||| ||||||||||||    
T  35423544 acaggaagcttcggttctgtttacaaaggatctcttctctactttgaaaaacctattgctgtaaaggtgtt 35423614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 35376185 - 35376355
Alignment:
Q  95 gttaccttcttcaccatctctaaataacggactcttgaggtatacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggt 194  Q
    |||| |||||||||||||| | |  |||||   |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  35376185 gttatcttcttcaccatctttgataaacgggagcttgagggttacttatggagagctacatgaagcaaccaatggattttcttcatccaatttggtcggt 35376284  T
Q  195 acaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattgttgtaaaggtgtt 265  Q
    ||||||||||| || |||||||||||||||||| | ||| ||| ||||| |||||||| ||||||||||||    
T  35376285 acaggaagcttcggttctgtttacaaaggatctattctctactttgaaaaacctattgctgtaaaggtgtt 35376355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 35754635 - 35754763
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    |||||||||||||||  ||||||||||  |||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||    
T  35754635 tacttatggagagctatatgaagcaactgatggattttcttcagccaatttggttggaacaggaagctttggatctgtttataaaggatctcttctcaac 35754734  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |||||||||||||||||||||||||||    
T  35754735 tttgaaagacctattgttgtaaaggtgtt 35754763  T

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Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 35366681 - 35366809
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||| ||||||| |||||||||||| |||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||    
T  35366681 tacttatagagagctacatgaagcaaccgatggcttttcttcatccaatttggttggaacaggaagttttggttctgtttacaaaggatctcttctcaac 35366780  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | ||||| ||| |||||||||||||||||    
T  35366781 tttgaaaaacccattgttgtaaaggtgtt 35366809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 35370069 - 35370193
Alignment:
Q  141 tatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaactgtg 240  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |  |||| ||    
T  35370069 tatggagagctacatgaagcaaccattgggttttcttcatccaatttggttggtacatgaagctttggctctgtttacaaaggatctcttccaaactttg 35370168  T
Q  241 aaagacctattgttgtaaaggtgtt 265  Q
    |||||||||||||  ||||||||||    
T  35370169 aaagacctattgtgttaaaggtgtt 35370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 35406413 - 35406505
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctct 229  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35406413 tacttatggagagctacatgaagcaaccaatggtttttcttcttccaatttggtaggaacaggaagctttggctctgtttacaaaggatctct 35406505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 35436850 - 35436962
Alignment:
Q  153 catgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattg 252  Q
    |||||||||||||| ||||||||||||||||| ||||||||  ||||||| ||||| ||||| |||||||||||||| || || | |||| |||||||||    
T  35436850 catgaagcaaccaacggattttcttcatccaacttggtaggcgcaggaagttttggttctgtatacaaaggatctcttcttaaatttgaaggacctattg 35436949  T
Q  253 ttgtaaaggtgtt 265  Q
    | |||||||||||    
T  35436950 tagtaaaggtgtt 35436962  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 35385214 - 35385293
Alignment:
Q  183 aatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattgttgtaaaggt 262  Q
    |||||||| ||  ||||||||||||| |||||||| ||||||||||| ||||||| |||||| ||||||| | |||||||    
T  35385214 aatttggttggagcaggaagctttggatctgtttataaaggatctcttctcaactttgaaagccctattgctataaaggt 35385293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 137 - 265
Target Start/End: Complemental strand, 10416056 - 10415928
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |  | |    
T  10416056 tacttatggagagctacatgaatcaaccaatggtttttcttcttccaatttggtaggaacaggaagctttggctctgtttacaaaggatctcttccaagc 10415957  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |||||||||||||||||||||||||||    
T  10415956 tttgaaagacctattgttgtaaaggtgtt 10415928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 10420943 - 10420818
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| || |||    
T  10420943 tacttatagagagctacatgaagcaaccaatgggttttcttcatccaatttggttggaacaggaagttttggttctgtttacaaaggatctcttcttaac 10420844  T
Q  237 tgtgaaagacctattgttgtaaaggt 262  Q
    | ||||| ||| ||||||||||||||    
T  10420843 tttgaaaaacccattgttgtaaaggt 10420818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 10410336 - 10410237
Alignment:
Q  166 atggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattgttgtaaaggtgtt 265  Q
    |||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  10410336 atggattttcttcatccaatttggtaggtagaggaggatttggttctgtttacaaaggatctcttctctactttgaaagacctattgttgtaaaggtgtt 10410237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 30625892 - 30626020
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||||| ||| | ||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||    
T  30625892 tacttatggtgagatacatgaggccaccaatgggttttcttcatcaaatttggtagggacaggaagctttgcctctgtttacaaaggatctctcctttac 30625991  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |||||||||||||||||||||||||||    
T  30625992 tttgaaagacctattgttgtaaaggtgtt 30626020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 30662843 - 30662971
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||||| ||| | ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||  ||    
T  30662843 tacttatggtgagatacatgaggccaccaatgggttttcttcatccaatttggtagggacaggaagctttgcctccgtttacaaaggatctctcctttac 30662942  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |||||||||||||||||||||||||||    
T  30662943 tttgaaagacctattgttgtaaaggtgtt 30662971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 30671523 - 30671651
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    ||||||||| ||| | ||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||    
T  30671523 tacttatggtgagatacatgaggccaccaatgggttttcttcatcaaatttggtagggacaggaagctttgcctctgtttacaaaggatctctcctttac 30671622  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |||||||||||||||||||||||||||    
T  30671623 tttgaaagacctattgttgtaaaggtgtt 30671651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 265
Target Start/End: Complemental strand, 29623497 - 29623369
Alignment:
Q  137 tacttatggagagctgcatgaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaac 236  Q
    |||||||||||| || ||||||||||||||||||| ||||||||| |||||| ||||  ||||||||||||| ||||| |||| ||||||||| | ||||    
T  29623497 tacttatggagacctacatgaagcaaccaatggatattcttcatctaatttgttaggagcaggaagctttggatctgtctacataggatctcttcccaac 29623398  T
Q  237 tgtgaaagacctattgttgtaaaggtgtt 265  Q
    | |  |||||||||||   ||||||||||    
T  29623397 tttcgaagacctattgccataaaggtgtt 29623369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 13564470 - 13564579
Alignment:
Q  156 gaagcaaccaatggattttcttcatccaatttggtaggtacaggaagctttggctctgtttacaaaggatctctcctcaactgtgaaagacctattgttg 255  Q
    ||||||||||| |||||||||||||||||| || ||||||||  ||||||||| |||||||||||||||||| |   | | | |||||||||||||||||    
T  13564470 gaagcaaccaacggattttcttcatccaatctgataggtacaataagctttggttctgtttacaaaggatctatttcctattttgaaagacctattgttg 13564569  T
Q  256 taaaggtgtt 265  Q
    |||| |||||    
T  13564570 taaaagtgtt 13564579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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