View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_high_25 (Length: 217)
Name: NF18799_high_25
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_high_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 40179197 - 40178981
Alignment:
| Q |
1 |
catttcgggtcggtttgaacaagccctgatgttgatgatctgtatctgcaaacctgatctccattttcaatcactttctttgcctcaattagaacaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179197 |
catttcgggtcggtttgaacaagccctgatgttgatgatctgtatctgcaaacctgatctccattttcaatcactttctttgcctcaattagaacaagtg |
40179098 |
T |
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| Q |
101 |
tttcttgtctagtccatcttgggtgtcttgtggctttgactctttcactgcttttgggttcagcagtttctactggttgtgctccaactggtgtagttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179097 |
tttcttgtctagtccatcttgggtgtcttgtggctttgactctttcactgcttttgggttcagcagtttctactggttgtgctccaactggtgtagttgg |
40178998 |
T |
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| Q |
201 |
agactcagcactaattt |
217 |
Q |
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||||||||||||||||| |
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| T |
40178997 |
agactcagcactaattt |
40178981 |
T |
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