View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_high_5 (Length: 412)
Name: NF18799_high_5
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 32995343 - 32994963
Alignment:
| Q |
16 |
atatacgagcaggatgggttggattcttttgtactgcatggttaatagctagcaagagccttggatttgcaaaacactcattaagcgtgagcggctcagc |
115 |
Q |
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| T |
32995343 |
atatacgagcaggatgggttggattcttttgtactgcatggttaatagctagcaagagccttggatttgcaaaacactcatttagcgtgagcggctcagc |
32995244 |
T |
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| Q |
116 |
aatttcaaattattctgctgcttggggtagccgcaacctttcacacaaacattctgattaggagctgatcagaggcaggagcttatgtgttgagttacat |
215 |
Q |
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| T |
32995243 |
aatttcaaattattctgctgcttggggtagccgcaacctttcacacaaacattctgattaggagctgatcacaggcaggagcttatgtgttgagttacat |
32995144 |
T |
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| Q |
216 |
gtggatgctgagaaatagcaaaaacttcttctgtcgactggaatattcccaaatcccactcactgtttggtttcgatggctatgattatgtttgtactta |
315 |
Q |
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| T |
32995143 |
gtggatgctgtgaaatagcaaaaacttcttctgtcgactggaatattcccaaatcccactcactgtttggtttcgatggctatgattatgtttgtactta |
32995044 |
T |
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| Q |
316 |
tgagctgagagcagtgttgataaaatatgctggttgtatgtattgtgttacacaattaagggttgaaaaagtattgacttt |
396 |
Q |
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| T |
32995043 |
tgagctgagagcagtgttgataaaatatgctggttgtatgtattgtgttacacaattaagggttgaaaaagtattggcttt |
32994963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 108 - 304
Target Start/End: Complemental strand, 32988019 - 32987823
Alignment:
| Q |
108 |
ggctcagcaatttcaaattattctgctgcttggggtagccgcaacctttcacacaaacattctgattaggagctgatcagaggcaggagcttatgtgttg |
207 |
Q |
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| T |
32988019 |
ggctctgcaatttcaacttattctgctgcttggggtagctgtaaccttttacacaaacattccaattaggagctaatcacacacggcagcttatgcgcta |
32987920 |
T |
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| Q |
208 |
agttacatgtggatgctgagaaatagcaaaaacttcttctgtcgactggaatattcccaaatcccactcactgtttggtttcgatggctatgattat |
304 |
Q |
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|||||||||||||||||| ||||| ||||| |||||| | | |||| | | ||||| ||||||| |||||||||||||||| |||||||||||||| |
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| T |
32987919 |
agttacatgtggatgctgtgaaatgtcaaaagcttcttatattgactaggacattcctaaatcccgctcactgtttggtttccatggctatgattat |
32987823 |
T |
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