View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_10 (Length: 322)
Name: NF18799_low_10
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 40964467 - 40964169
Alignment:
| Q |
1 |
aaaaatggaaaagaaacataaaattgaattgaccatgaacgttacatctttgtatgagattcaacggacaaaagctcttaatcaataaagactgtggagc |
100 |
Q |
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| T |
40964467 |
aaaaatggaaaagaaacataaaattgaattgaccatgaacgttacatctttgtatgagattcaacggacaaaagctcttaatcaataaagactgtggagc |
40964368 |
T |
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| Q |
101 |
ttctcccacatggcaagtttgatgttacaaaaccaacggaaagataagaatcccatgcttcaacaggnnnnnnnnnnnnnnnnnntcttgtagaccaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40964367 |
ttctcccacatggcaagtttgatgttacaaaaccaacggaaagataagaatcccatgcttcaacagg-------aaaaaaaataatcttgtagaccaaaa |
40964275 |
T |
|
| Q |
201 |
attgaaatggaaataagttttttctagacttaattgcaattttagtctacattttaatcaatttgtggagtttggtccccttttaatcaattcatgaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40964274 |
attgaaatggaaataagttttttctagacttaattgcaattttagtctacattttaatcaatttgtggagtttggtccccttttaatcaattcatgaaaa |
40964175 |
T |
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