View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_13 (Length: 288)
Name: NF18799_low_13
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_13 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 29928774 - 29928502
Alignment:
| Q |
12 |
gaacctgtgcatcactcattaaattttaatattgagtcaacattagatccacatatgtttataattaagagaaaagtttgnnnnnnntagatcacttaca |
111 |
Q |
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| T |
29928774 |
gaacctgtacatcactcacaaaaatttaatattgagtcaacattagatacacatatgtttataattaagagaaaattatgaaaaaa-tagatcacttaca |
29928676 |
T |
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| Q |
112 |
gtaacatattgttgttgcaaagtttcattcgtgctatcatttttgtcgctgctccacgaacaatagcacaaattcaaagggttattaactttatatctaa |
211 |
Q |
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| T |
29928675 |
gtaacatattgttgttgcaaagtttcattcgtgctctcatttttgtcgctgctccatgaacaatagcacaaattcaaaaggttattagctttatatctaa |
29928576 |
T |
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| Q |
212 |
acctaattaatatcataatatattgaaccctaattgattttattatgcacnnnnnnntgcaaacctgtcttccatcc |
288 |
Q |
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| T |
29928575 |
ccctaattaatatcatcaaatattgaaccttaattgattttattatgcac---aaaatgcaaacctgtcttccatcc |
29928502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 28259425 - 28259316
Alignment:
| Q |
99 |
tagatcacttacagtaacatattgttgttgcaaagtttcattcgtgctatcatttttgtcgctgctccacgaacaatagcacaaattcaaagggttatta |
198 |
Q |
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| T |
28259425 |
tagatcacttacggtaaaatattgctgttgcaaagtttcatatgtcctatcatttttgtcactgctcgaagaacaaaagcacaaattcataaggttaata |
28259326 |
T |
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| Q |
199 |
actttatatc |
208 |
Q |
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| T |
28259325 |
gttttatatc |
28259316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 28259112 - 28259043
Alignment:
| Q |
219 |
taatatcataatatattgaaccctaattgattttattatgcacnnnnnnntgcaaacctgtcttccatcc |
288 |
Q |
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| T |
28259112 |
taatatcatcatatattgaaccctaatggattttattatgcacaaaaaaatgcaaacctgtcttccatcc |
28259043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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