View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18799_low_17 (Length: 256)
Name: NF18799_low_17
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42186743 - 42186979
Alignment:
| Q |
1 |
tggaaaaatttcatgttagtgcatgttcggattggtggtgagttcggcagaatcatgctgtgctgccataatttaaaaaatcacacagccaccgaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42186743 |
tggaaaaatttcatgttagtgcatgttcggattggtggtgagttcggcagaatcatggtgtgctgccacaatttaaaaaatcacacagccaccgaaattt |
42186842 |
T |
|
| Q |
101 |
tgccaaactcatggtgatatcaaacacgtttacacttaaacaagttcaaattctcatatttatgtaagaatcctaattggttaatttctaaattgttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42186843 |
tgccaaactcatggtgatatcaaacacgtttacacttaaacaagttcaaattctcatatttatgtaagaatcctaattggttaatttctaaattgtaaag |
42186942 |
T |
|
| Q |
201 |
gtgaactatgtgaatgctcatgccacatccacactag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42186943 |
gtgaactatgtgaatgctcatgccacatccacactag |
42186979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 42196704 - 42196768
Alignment:
| Q |
168 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatccac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42196704 |
gaatcctaattggttaatttctaaattgtaaaggtgaactatgtgaatgctcatgccacatccac |
42196768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 42203961 - 42204022
Alignment:
| Q |
168 |
gaatcctaattggttaatttctaaattgttaaggtgaactatgtgaatgctcatgccacatc |
229 |
Q |
| |
|
|||||||||||| || ||| ||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
42203961 |
gaatcctaattgtctacttttcaaattgtaaaggtgaactatgtaaatgctcacgccacatc |
42204022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University