View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_19 (Length: 245)
Name: NF18799_low_19
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31528288 - 31528063
Alignment:
| Q |
1 |
ttttccctcacatcacattctctccaaaatctttcctttcccttttcttttcattcatactcttaaccagaacttaactaattttgacggtgaataaaca |
100 |
Q |
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| T |
31528288 |
ttttccctcacatcacattctctccaaaatctttcctttcccttttcttttcattcatactcttaaccagaacttaactaattttgacggtgaataaaca |
31528189 |
T |
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| Q |
101 |
tttgtttcctagtattttatttgtattcttatgactttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaagtaa |
200 |
Q |
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| T |
31528188 |
tttgtttcctagtattttatttgtattcttatgactttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaagtaa |
31528089 |
T |
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| Q |
201 |
ctccattgtgtaatgagctcacacct |
226 |
Q |
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| T |
31528088 |
ctccattgtgtaatgagctcacacct |
31528063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 31497402 - 31497313
Alignment:
| Q |
137 |
ttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaagtaactccattgtgtaatgagctcacacct |
226 |
Q |
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| T |
31497402 |
ttttattatacaggtttcaaggaaacaaacaaagggtgttgtggaactggcacatttgaagtaactccattgtgtaatgaactcacacct |
31497313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 40845724 - 40845596
Alignment:
| Q |
100 |
atttgtttccta--gtattttatttgtattcttatgactttttattatacaggtttcaaggaaacaaacaaaggatgttgtggaactggcacatttgaag |
197 |
Q |
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| T |
40845724 |
atttgtttcctatagtatttattttgtatttttttgagtttttattatacaggtttcaaggaaacaaacaaaggatattgcggaactggcacatttgaag |
40845625 |
T |
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| Q |
198 |
taactccattgtgtaatgagctcacacct |
226 |
Q |
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| T |
40845624 |
taactccattgtgcaatgaactcacacct |
40845596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 31497556 - 31497512
Alignment:
| Q |
13 |
tcacattctctccaaaatctttcctttcccttttcttttcattca |
57 |
Q |
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| T |
31497556 |
tcacattccctccaaagtcttccctttcccttttcttttccttca |
31497512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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