View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_20 (Length: 240)
Name: NF18799_low_20
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40179691 - 40179473
Alignment:
| Q |
1 |
gtgtcactttgagcccccctacaatgttggatttcttagcatttggtgctttgaatgcactgttaaccatatttccattcatgtttgtctcattgttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
40179691 |
gtgtcactttgagcccccctacaatgttggatttcttagcatttggtgctttgaatggactgttaaccata---------atgtttgtctcattgttttc |
40179601 |
T |
|
| Q |
101 |
ctcctcagtgctccattccattttgtcactatcaacaatagcctcatcctcatcctcttcattttcatcctctttattacattgctctaacgccggcaca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40179600 |
ctcctcagtgctccattccattttgtcactatcaacaatagcctcatcctcatcctcttcattttcatcctctttattacattgctctaacgccggcaca |
40179501 |
T |
|
| Q |
201 |
ccttcaactggatcaccattctctgctc |
228 |
Q |
| |
|
||||||||| |||||||||||||||||| |
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| T |
40179500 |
ccttcaacttgatcaccattctctgctc |
40179473 |
T |
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