View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18799_low_23 (Length: 231)

Name: NF18799_low_23
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18799_low_23
NF18799_low_23
[»] chr2 (11 HSPs)
chr2 (19-231)||(8368676-8368888)
chr2 (19-231)||(8400522-8400734)
chr2 (19-231)||(8422099-8422311)
chr2 (158-231)||(8375375-8375448)
chr2 (158-231)||(8439655-8439728)
chr2 (155-231)||(8394824-8394900)
chr2 (155-231)||(8395067-8395143)
chr2 (155-231)||(8406429-8406505)
chr2 (155-231)||(8412549-8412625)
chr2 (155-231)||(8434647-8434723)
chr2 (155-212)||(8404487-8404544)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 8368676 - 8368888
Alignment:
Q  19 ttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggag 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  8368676 ttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgcagaagataatttgagggctaaaagaggagcaccggag 8368775  T
Q  119 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368776 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 8368875  T
Q  219 tgttttgatgcat 231  Q
    |||||||||||||    
T  8368876 tgttttgatgcat 8368888  T

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Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 8400734 - 8400522
Alignment:
Q  19 ttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggag 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  8400734 ttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgctgaagataatttgagggctaaaagaggagcaccggag 8400635  T
Q  119 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400634 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 8400535  T
Q  219 tgttttgatgcat 231  Q
    |||||||||||||    
T  8400534 tgttttgatgcat 8400522  T

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Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 8422311 - 8422099
Alignment:
Q  19 ttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggag 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  8422311 ttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgcggaagataatttgagggctaaaagaggagcaccggag 8422212  T
Q  119 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422211 ccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaa 8422112  T
Q  219 tgttttgatgcat 231  Q
    |||||||||||||    
T  8422111 tgttttgatgcat 8422099  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 8375448 - 8375375
Alignment:
Q  158 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    ||||| ||||||||||||||||| || ||||| || |||||||| |  || |||||||||||||||||||||||    
T  8375448 agagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgcat 8375375  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 8439655 - 8439728
Alignment:
Q  158 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    ||||| ||||||||||||||||| || ||||| || ||||||||    || |||||||||||||||||||||||    
T  8439655 agagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgcat 8439728  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 8394900 - 8394824
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||    
T  8394900 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcat 8394824  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 8395143 - 8395067
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||    
T  8395143 gtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcat 8395067  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 8406429 - 8406505
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||    
T  8406429 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcat 8406505  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 8412549 - 8412625
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||    
T  8412549 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcat 8412625  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 8434647 - 8434723
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcat 231  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| ||||||||    
T  8434647 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcat 8434723  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 8404487 - 8404544
Alignment:
Q  155 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgtt 212  Q
    ||||| || |||||||||||||||||||||| ||| || |||||||| || |||||||    
T  8404487 gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgtt 8404544  T

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