View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18799_low_26 (Length: 226)
Name: NF18799_low_26
Description: NF18799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18799_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 45644266 - 45644114
Alignment:
| Q |
74 |
caattgtcctttgaacatttgttaagaaatcaaatataagtagtaaaattatcttaaaatttatgtattcgcctcttaaaatagcacacaaacataagtc |
173 |
Q |
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| T |
45644266 |
caattttcctttaaacatttgttaagaaatcaaatataaatagtaaaattatcttaaaatttatgtattcgcctcttaaaatagcacacaaacataagtc |
45644167 |
T |
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| Q |
174 |
agattcttagtggaacttgaattagattctttaagcagggttttggatttgaa |
226 |
Q |
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| T |
45644166 |
agattcttagtggaacttgaattagattctttaagcaaggttttggatttgaa |
45644114 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 45644691 - 45644649
Alignment:
| Q |
75 |
aattgtcctttgaacatttgttaagaaatcaaatataagtagt |
117 |
Q |
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| T |
45644691 |
aattgtcctttgagcatttgttaagaaatcaattataagtagt |
45644649 |
T |
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